Standards in Genomic Sciences

Metagenome reports

Publication of your metagenomics data is a great way to comply with funder requirements of data release and to make your data open for the research community. Folker Meyer explains how Standards in Genomic Sciences can support the release of your metagenomics data sets.

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Genome report

Complete genome sequence of Microbulbifer sp. CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia

Tsu Horng Moh, Nyok-Sean Lau, Go Furusawa and Al-Ashraf Abdullah Amirul

Published on: 6 July 2017
Extended genome report

Genomics insights into production of 2-methylisoborneol and a putative cyanobactin by Planktothricoides sp. SR001

Shu Harn Te, Boon Fei Tan, Chek Yin Boo, Janelle Renee Thompson and Karina Yew-Hoong Gin

Published on: 5 June 2017
Short genome report

Draft genome sequence of Desulfoplanes formicivorans Pf12B^T, a sulfate-reducing bacterium of the family Desulfomicrobiaceae

Miho Watanabe, Hisaya Kojima and Manabu Fukui

Published on: 5 June 2017
Short genome report

Chromosomal features of Escherichia coli serotype O2:K2, an avian pathogenic E. coli

Steffen L. Jørgensen, Egle Kudirkiene, Lili Li, Jens P. Christensen, John E. Olsen, Lisa Nolan and Rikke H. Olsen

Published on: 10 May 2017
Short genome report

Complete genome sequence of bacteriochlorophyll-synthesizing bacterium Porphyrobacter neustonensis DSM 9434

Qian Liu, Yue-Hong Wu, Hong Cheng, Lin Xu, Chun-Sheng Wang and Xue-Wei Xu

Published on: 10 May 2017

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Short genome report

Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters

Huan Chen, Lauren M Brinkac, Pamela Mishra, Nan Li, Despoina S Lymperopoulou, Tamar L Dickerson, Nadine Gordon-Bradley, Henry N Williams and Jonathan H Badger

Published on: 24 March 2015
Commentary

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

Supratim Mukherjee, Marcel Huntemann, Natalia Ivanova, Nikos C Kyrpides and Amrita Pati

Published on: 30 March 2015
Extended genome report

Complete genome sequence of DSM 30083^T, the type strain (U5/41^T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

Jan P Meier-Kolthoff, Richard L Hahnke, Jörn Petersen, Carmen Scheuner, Victoria Michael, Anne Fiebig, Christine Rohde, Manfred Rohde, Berthold Fartmann, Lynne A Goodwin, Olga Chertkov, TBK Reddy, Amrita Pati, Natalia N Ivanova, Victor Markowitz, Nikos C Kyrpides…

Published on: 8 December 2014
Short genome report

Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S

Tobias Goris, Bastian Hornung, Thomas Kruse, Anika Reinhold, Martin Westermann, Peter J Schaap, Hauke Smidt and Gabriele Diekert

Published on: 24 February 2015
Standard operating procedure

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

Marcel Huntemann, Natalia N. Ivanova, Konstantinos Mavromatis, H. James Tripp, David Paez-Espino, Krishnaveni Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor M. Markowitz and Nikos C. Kyrpides

Published on: 26 October 2015

The Erratum to this article has been published in Standards in Genomic Sciences 2016 11:27

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Archival content

A complete electronic archive of articles published between 2009 and April 2014 can be found at http://www.ncbi.nlm.nih.gov/pmc/journals/1427.

Aims and scope

Standards in Genomic Sciences is an open access journal for rapid dissemination of concise genome and metagenome reports, detailed standard operating procedures, meeting reports, reviews and commentaries, data policies, white papers and other gray literature that is relevant but currently absent from the scholarly literature.

Short Genome Reports

A reduced rate of £890 applies to Short Genome Reports. Authors submitting such reports must enter the discount code SGREP on the payment page during the article submission process.

Society information

The Genomic Standards Consortium (GSC) is an open-membership working body formed in September 2005. The goal of this international community is to promote mechanisms that standardize the description of genomes and the exchange and integration of genomic data.

Society meeting

Thank you to all those who attended the 18^th Genomic Standards Consortium meeting in June 2016!