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  1. Short genome report

    High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea

    Nakamurella lactea DLS-10T , isolated from rock in Korea, is one of the four type strains of the genus Nakamurella. In this study, we describe the high quality dra...

    Imen Nouioui, Markus Göker, Lorena Carro, Maria del Carmen Montero-Calasanz, Manfred Rohde, Tanja Woyke, Nikos C. Kyrpides and Hans-Peter Klenk

    Standards in Genomic Sciences 2017 12:4

    Published on: 6 January 2017

  2. Short genome report

    Complete genome sequence of the salmonella enterica serovar enteritidis bacteriophages fSE1C and fSE4C isolated from food matrices

    Salmonella enterica serovar Enteritidis is one of the most common causes of Salmonellosis worldwide. Utilization of bacteriophages as prophylactic agents is a practical solution to preven...

    Javier Santander, Jose I. Vasquez, Cristopher Segovia, Leonardo Santos, Gabriel Turra, Karen Huber and James Robeson

    Standards in Genomic Sciences 2017 12:1

    Published on: 5 January 2017

  3. Short genome report

    Complete genome sequence and whole-genome phylogeny of Kosmotoga pacifica type strain SLHLJ1T from an East Pacific hydrothermal sediment

    Kosmotoga pacifica strain SLHLJ1T is a thermophilic chemoorganoheterotrophic bacterium isolated from a deep-sea hydrothermal sediment. It belongs to the physiologically homogeneous Thermo...

    Lijing Jiang, Stéphane L’Haridon, Mohamed Jebbar, Hongxiu Xu, Karine Alain and Zongze Shao

    Standards in Genomic Sciences 2017 12:3

    Published on: 5 January 2017

  4. Short genome report

    Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33T and comparison with related Actinobacteria

    Agromyces aureus AR33T is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead...

    Erika Corretto, Livio Antonielli, Angela Sessitsch, Stéphane Compant, Christoph Höfer, Markus Puschenreiter and Günter Brader

    Standards in Genomic Sciences 2017 12:2

    Published on: 5 January 2017

  5. Short genome report

    Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge

    Actinoalloteichus hymeniacidonis HPA 177T is a Gram-positive, strictly aerobic, black pigment producing and spore-forming actinomycete, which forms branching vegetative hyphae and was iso...

    Lena Schaffert, Andreas Albersmeier, Anika Winkler, Jörn Kalinowski, Sergey B. Zotchev and Christian Rückert

    Standards in Genomic Sciences 2016 11:91

    Published on: 20 December 2016

  6. Short genome report

    Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria

    Oligoflexus tunisiensis Shr3T is the first strain described in the newest (eighth) class Oligoflexia of the phylum Proteobacteria. This strain was isolated from the 0.2-μm filtrate of a s...

    Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Tomoya Baba, Miyuki Nishijima, Fatma Karray, Sami Sayadi, Hiroko Isoda, Takeshi Naganuma and Hironori Niki

    Standards in Genomic Sciences 2016 11:90

    Published on: 13 December 2016

  7. Short genome report

    Complete genome sequence of new bacteriophage phiE142, which causes simultaneously lysis of multidrug-resistant Escherichia coli O157:H7 and Salmonella enterica

    The emergence of antibiotic-resistant foodborne bacteria is a global health problem that requires immediate attention. Bacteriophages are a promising biotechnological alternative approach against bacterial pat...

    Luis Amarillas, Cristobal Chaidez, Arturo González-Robles and Josefina León-Félix

    Standards in Genomic Sciences 2016 11:89

    Published on: 13 December 2016

  8. Metagenome report

    Metagenome phylogenetic profiling of microbial community evolution in a tetrachloroethene-contaminated aquifer responding to enhanced reductive dechlorination protocols

    Chlorinated solvent contamination of potable water supplies is a serious problem worldwide. Biostimulation protocols can successfully remediate chlorinated solvent contamination through enhanced reductive dech...

    Rebecca A. Reiss, Peter Guerra and Oleg Makhnin

    Standards in Genomic Sciences 2016 11:88

    Published on: 1 December 2016

  9. Short genome report

    Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer

    Streptomyces sp. TP-A0867 (=NBRC 109436) produces structurally complex polyketides designated alchivemycins A and B. Here, we report the draft genome sequence of this strain together with...

    Hisayuki Komaki, Natsuko Ichikawa, Akio Oguchi, Moriyuki Hamada, Enjuro Harunari, Shinya Kodani, Nobuyuki Fujita and Yasuhiro Igarashi

    Standards in Genomic Sciences 2016 11:85

    Published on: 24 October 2016

  10. Short genome report

    Draft genome sequence of Micromonospora sp. DSW705 and distribution of biosynthetic gene clusters for depsipeptides bearing 4-amino-2,4-pentadienoate in actinomycetes

    Here, we report the draft genome sequence of Micromonospora sp. DSW705 (=NBRC 110037), a producer of antitumor cyclic depsipeptides rakicidins A and B, together with the features of this strain and generation, an...

    Hisayuki Komaki, Natsuko Ichikawa, Akira Hosoyama, Moriyuki Hamada, Enjuro Harunari, Arisa Ishikawa and Yasuhiro Igarashi

    Standards in Genomic Sciences 2016 11:84

    Published on: 22 October 2016

  11. Short genome report

    Draft genome sequence of Streptomyces sp. MWW064 for elucidating the rakicidin biosynthetic pathway

    Streptomyces sp. MWW064 (=NBRC 110611) produces an antitumor cyclic depsipeptide rakicidin D. Here, we report the draft genome sequence of this strain together with features of the organi...

    Hisayuki Komaki, Arisa Ishikawa, Natsuko Ichikawa, Akira Hosoyama, Moriyuki Hamada, Enjuro Harunari, Takuya Nihira, Watanalai Panbangred and Yasuhiro Igarashi

    Standards in Genomic Sciences 2016 11:83

    Published on: 21 October 2016

  12. Short genome report

    Draft genome of Prochlorothrix hollandica CCAP 1490/1T (CALU1027), the chlorophyll a/b-containing filamentous cyanobacterium

    Prochlorothrix hollandica is filamentous non-heterocystous cyanobacterium which possesses the chlorophyll a/b light-harvesting complexes. Despite the growing interest in unusual green-pig...

    Natalia Velichko, Mikhail Rayko, Ekaterina Chernyaeva, Alla Lapidus and Alexander Pinevich

    Standards in Genomic Sciences 2016 11:82

    Published on: 18 October 2016

  13. Extended genome report

    Draft genome sequence of the marine Rhodobacteraceae strain O3.65, cultivated from oil-polluted seawater of the Deepwater Horizon oil spill

    The marine alphaproteobacterium strain O3.65 was isolated from an enrichment culture of surface seawater contaminated with weathered oil (slicks) from the Deepwater Horizon (DWH) oil spill and belongs to the u...

    Helge-Ansgar Giebel, Franziska Klotz, Sonja Voget, Anja Poehlein, Katrin Grosser, Andreas Teske and Thorsten Brinkhoff

    Standards in Genomic Sciences 2016 11:81

    Published on: 13 October 2016

  14. Short genome report

    Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB)

    Methanoculleus bourgensis strain MAB1 has been identified as the hydrogenotrophic partner of mesophilic acetate-oxidising bacteria, a syntrophic relationship operating close to the thermo...

    Shahid Manzoor, Anna Schnürer, Erik Bongcam-Rudloff and Bettina Müller

    Standards in Genomic Sciences 2016 11:80

    Published on: 12 October 2016

  15. Short genome report

    Genome sequences and annotation of two urinary isolates of E. coli

    The genus Escherichia includes pathogens and commensals. Bladder infections (cystitis) result most often from colonization of the bladder by uropathogenic E. coli strains. In contrast, a poorly defined condition ...

    Travis K. Price, Arya Mehrtash, Laurynas Kalesinskas, Kema Malki, Evann E. Hilt, Catherine Putonti and Alan J. Wolfe

    Standards in Genomic Sciences 2016 11:79

    Published on: 12 October 2016

  16. Commentary

    MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources

    Here we introduce a MIxS extension to facilitate the recording and cataloguing of metadata from samples related to hydrocarbon resources. The proposed MIxS-HCR package incorporates the core features of the MIx...

    Nicolas Tsesmetzis, Pelin Yilmaz, Peter C. Marks, Nikos C. Kyrpides, Ian M. Head and Bart P. Lomans

    Standards in Genomic Sciences 2016 11:78

    Published on: 12 October 2016

  17. Erratum

    Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

    Rich Boden, Lee P. Hutt, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, Tatiparthi Reddy, Chew Yee Ngan, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke…

    Standards in Genomic Sciences 2016 11:77

    Published on: 11 October 2016

    The original article was published in Standards in Genomic Sciences 2016 11:74

  18. Short genome report

    A draft genome sequence of Pseudomonas veronii R4: a grapevine (Vitis vinifera L.) root-associated strain with high biocontrol potential

    A new plant commensal Pseudomonas veronii isolate (strain R4) was identified from a Xiphinema index biocontrol screen. Isolated from grapevine roots from vineyards in central Chile, the strain R4 exhibited a slow...

    Christian Montes, Fabiola Altimira, Hayron Canchignia, Álvaro Castro, Evelyn Sánchez, María Miccono, Eduardo Tapia, Álvaro Sequeida, Jorge Valdés, Paz Tapia, Carolina González and Humberto Prieto

    Standards in Genomic Sciences 2016 11:76

    Published on: 11 October 2016

  19. Short genome report

    Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

    Thermithiobacillus tepidarius DSM 3134T was originally isolated (1983) from the waters of a sulfidic spring entering the Roman Baths (Temple of Sulis-Minerva) at Bath, United Kingdom and ...

    Rich Boden, Lee P. Hutt, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, Tatiparthi Reddy, Chew Yee Ngan, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke…

    Standards in Genomic Sciences 2016 11:74

    Published on: 26 September 2016

    The Erratum to this article has been published in Standards in Genomic Sciences 2016 11:77

  20. Extended genome report

    Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites

    Pseudomonas citronellolis is a Gram negative, motile gammaproteobacterium belonging to the order Pseudomonadales and the family Pseudomonadaceae. We isolated strain P3B5 from the phyllosp...

    Mitja N.P. Remus-Emsermann, Michael Schmid, Maria-Theresia Gekenidis, Cosima Pelludat, Jürg E. Frey, Christian H. Ahrens and David Drissner

    Standards in Genomic Sciences 2016 11:75

    Published on: 26 September 2016

  21. Short genome report

    Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium

    Bacillus amyloliquefaciens TF28 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant pathogenic fungi. The strain has the potential to be developed...

    Shumei Zhang, Wei Jiang, Jing Li, Liqiang Meng, Xu Cao, Jihua Hu, Yushuai Liu, Jingyu Chen and Changqing Sha

    Standards in Genomic Sciences 2016 11:73

    Published on: 21 September 2016

  22. Short genome report

    Genome sequence of Candidatus Arsenophonus lipopteni, the exclusive symbiont of a blood sucking fly Lipoptena cervi (Diptera: Hippoboscidae)

    Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). ...

    Eva Nováková, Václav Hypša, Petr Nguyen, Filip Husník and Alistair C. Darby

    Standards in Genomic Sciences 2016 11:72

    Published on: 17 September 2016

  23. Short genome report

    The complete genome sequences of sulfur-oxidizing Gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T

    Sulfurifustis variabilis and Sulfuricaulis limicola are autotrophic sulfur-oxidizing bacteria belonging to the family Acidiferrobacteraceae in the order Acidiferrobacterales. The type str...

    Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima and Manabu Fukui

    Standards in Genomic Sciences 2016 11:71

    Published on: 15 September 2016

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