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Correction to: Neisseria lactamica Y92–1009 complete genome sequence

  • Anish K. Pandey1Email author,
  • David W. Cleary1,
  • Jay R. Laver1,
  • Martin C. J. Maiden2,
  • Xavier Didelot3,
  • Andrew Gorringe4 and
  • Robert C. Read1Email author
Standards in Genomic Sciences201813:4

https://doi.org/10.1186/s40793-017-0288-5

Published: 16 February 2018

The original article was published in Standards in Genomic Sciences 2017 12:41

Correction

After publication of the original article [1] it was identified that an incorrect version of the manuscript has been published. This was caused by a technical error which led to a discrepancy between the editorially-accepted version of the manuscript, and the published version.

A list of Corrections is included below:
  1. 1)

    The following abbreviations have been corrected throughout the article:

    Nla changed to N. lactamica

    Nme changed to N. meningitides

    N.go changed to N. gonorrhoeae

    Nci changed to N. cinerea

     
  2. 2)

    Table 1: ‘Term’ and ‘Evidence code’ columns of the first 7 rows have been updated to the following:

     

Domain Bacteria

TAS [37]

Phylum Proteobacteria

TAS [38]

Class Betaproteobacteria

TAS [39, 40]

Order Neisseriales

TAS [39, 41]

Family - Neisseriaceae

TAS [42]

Genus Neisseria

TAS [42]

Species Neisseria lactamica

TAS [42, 43]

  1. 3)

    Table 2: Missing/blank term for MIGS 13 has been changed to read “Strain is not publicly available”.

     
  2. 4)

    2nd paragraph under heading “Insights from the genome sequence”: Sentence containing “…approximately a third (33.5%) of all open reading frames (ORFs) in this genome…” has been shortened to “approximately a third (33.5%) of all ORFs in this genome…”

     
  3. 5)

    3rd paragraph under heading “Insights from the genome sequence”: Bracketed abbreviation ‘(DUS)’ has been removed.

     
  4. 6)

    3rd paragraph under heading “Insights from the genome sequence”: Bracketed abbreviation ‘(CREEs)’ has been removed

     
  5. 7)

    Bracketed link for PHAST ‘(http://phast.wishartlad.com/index.html)’ changed to reference 35.

     
  6. 8)

    Reference 14 initially missing from article, has now been added and correctly referenced

     
  7. 9)

    Reference 33 was removed, as it was a duplicate of reference 30.

     
  8. 10)

    References 36–40 removed, and replaced with updated reference list (36–46):

     

36. Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol. 2008;26:541–7.

37. Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci. 1990;87:4576–9. https://doi.org/10.1073/pnas.87.12.4576.

38. Garrity GM, Holt JG. The Road Map to the Manual. In: Bergey’s Manual® of Systematic Bacteriology. 2001. p. 119–66. https://doi.org/10.1007/978-0-387-21609-6_15.

39. Euzeby. J. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol. 2006;56:1–6.

40. Garrity GM, Bell JA, Lilburn T. Class II. Betaproteobacteria class. Nov. In: Bergey’s Manual® of Systematic Bacteriology. 2005. p. 575–922. https://doi.org/10.1007/0-387-29298-5_2.

41. Tønjum T. Neisseriales ord. Nov. In: Bergey’s Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Ltd.; 2015. https://doi.org/10.1002/9781118960608.obm00079.

42. SKERMAN VBD, McGOWAN V, SNEATH PHA. Approved Lists of Bacterial Names. Int J Syst Evol Microbiol. 1980;30:225–420.

43. Hollis DG, Wiggins GL, Weaver RE. Neisseria lactamicus sp. n., a lactose-fermenting species resembling Neisseria meningitidis. Appl Microbiol. 1969;17:71–7.

44. Aho EL, Keating a M, McGillivray SM. A comparative analysis of pilin genes from pathogenic and nonpathogenic Neisseria species. Microb Pathog. 2000;28:81–8.

45. Lennette, Edwin H. Manual of Clinical Microbiology. 4th edition. Washington DC: American Society for Microbiology; 1985.

46. Neisseria MLST website. https://pubmlst.org/neisseria/. Accessed 2 Feb 2017.

The Publisher apologises for this error.

Notes

Declarations

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Authors’ Affiliations

(1)
Faculty of Medicine, Southampton NIHR Biomedical Research Centre and Institute for Life Sciences, University of Southampton, Southampton, UK
(2)
Department of Zoology, University of Oxford, Oxford, UK
(3)
Department of Infectious Disease Epidemiology, Imperial College London, London, UK
(4)
Public Health England, Porton Down, UK

Reference

  1. Pandey AK, Cleary DW, Laver JR, Maiden MCJ, Didelot X, Gorringe A, Read RC. Neisseria lactamica Y92–1009 complete genome sequence. Stand Genomic Sci. 2017;12:41. https://doi.org/10.1186/s40793-017-0250-6.View ArticlePubMedPubMed CentralGoogle Scholar

Copyright

© The Author(s). 2018

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