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  1. Short genome report

    Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

    Jiangella gansuensis strain YIM 002T is the type strain of the type species of the genus Jiangella, which is at the present time composed of five species, and was isolated from desert soi...

    Jian-Yu Jiao, Lorena Carro, Lan Liu, Xiao-Yang Gao, Xiao-Tong Zhang, Wael N. Hozzein, Alla Lapidus, Marcel Huntemann, T. B. K. Reddy, Neha Varghese, Michalis Hadjithomas, Natalia N. Ivanova, Markus Göker, Manoj Pillay, Jonathan A. Eisen, Tanja Woyke…

    Standards in Genomic Sciences 2017 12:21

    Published on: 3 February 2017

  2. Short genome report

    Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies

    Pseudoalteromonas phage vB_PspS-H40/1 is a lytic phage that infects Pseudoalteromonas sp. strain H40. Both, the phage and its host were isolated in the 1970s from seawater samples collect...

    René Kallies, Bärbel Kiesel, Matthias Schmidt, Johannes Kacza, Nawras Ghanem, Anja Narr, Jakob Zopfi, Lukas Y. Wick, Jörg Hackermüller, Hauke Harms and Antonis Chatzinotas

    Standards in Genomic Sciences 2017 12:20

    Published on: 2 February 2017

  3. Extended genome report

    Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872

    The article provides an overview of the genomic features of Lactobacillus fermentum strain 3872. The genomic sequence reported here is one of three L. fermentum genome sequences completed to date. Comparative gen...

    Burhan Lehri, Alan M. Seddon and Andrey V. Karlyshev

    Standards in Genomic Sciences 2017 12:19

    Published on: 1 February 2017

  4. Extended genome report

    The complete genome sequence of the yogurt isolate Streptococcus thermophilus ACA-DC 2

    Streptococcus thermophilus ACA-DC 2 is a newly sequenced strain isolated from traditional Greek yogurt. Among the 14 fully sequenced strains of S. thermophilus currently deposited in the ...

    Voula Alexandraki, Maria Kazou, Jochen Blom, Bruno Pot, Effie Tsakalidou and Konstantinos Papadimitriou

    Standards in Genomic Sciences 2017 12:18

    Published on: 31 January 2017

  5. Extended genome report

    Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72

    We report here the draft genome sequences of eight bacterial strains of the genera Staphylococcus, Microbacterium, Mycobacterium, Plantibacter, and Pseudomonas. These isolates were obtained from aerosol sampling ...

    Despoina S. Lymperopoulou, David A. Coil, Denise Schichnes, Steven E. Lindow, Guillaume Jospin, Jonathan A. Eisen and Rachel I. Adams

    Standards in Genomic Sciences 2017 12:17

    Published on: 31 January 2017

  6. Short genome report

    Genomic analysis of four strains of Corynebacterium pseudotuberculosis bv. Equi isolated from horses showing distinct signs of infection

    The genomes of four strains (MB11, MB14, MB30, and MB66) of the species Corynebacterium pseudotuberculosis biovar equi were sequenced on the Ion Torrent PGM platform, completely assembled, and their gene content ...

    Rafael A. Baraúna, Rommel T. J. Ramos, Adonney A. O. Veras, Pablo H. C. G. de Sá, Luís C. Guimarães, Diego A. das Graças, Adriana R. Carneiro, Judy M. Edman, Sharon J. Spier, Vasco Azevedo and Artur Silva

    Standards in Genomic Sciences 2017 12:16

    Published on: 31 January 2017

  7. Extended genome report

    Draft genome sequence of Lactobacillus plantarum strains E2C2 and E2C5 isolated from human stool culture

    Probiotic Lactobacillus species offer various health benefits, thus have been employed in treatment and prevention of various diseases. Due to the differences in the isolation source and the site of action, most ...

    Mangesh V. Suryavanshi, Dhiraj Paul, Swapnil P. Doijad, Shrikant S. Bhute, Tejashri B. Hingamire, Rahul P. Gune and Yogesh S. Shouche

    Standards in Genomic Sciences 2017 12:15

    Published on: 30 January 2017

  8. Extended genome report

    Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture

    Here we report three complete bacterial genome assemblies from a PacBio shotgun metagenome of a co-culture from Upper Klamath Lake, OR. Genome annotations and culture conditions indicate these bacteria are dep...

    Connor B. Driscoll, Timothy G. Otten, Nathan M. Brown and Theo W. Dreher

    Standards in Genomic Sciences 2017 12:9

    Published on: 19 January 2017

  9. Short genome report

    Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria

    Thiobacillus thioparus DSM 505T is one of first two isolated strains of inorganic sulfur-oxidising Bacteria. The original strain of T. thioparus was lost almost 100 years ago and the work...

    Lee P. Hutt, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, Tatiparthi Reddy, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos Kyrpides, Tanja Woyke and Rich Boden

    Standards in Genomic Sciences 2017 12:10

    Published on: 19 January 2017

  10. Short genome report

    High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond

    Strain S3-2T, isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2T is a facultative anaerobe that lacks the abil...

    Xianzhe Gong, Stig Skrivergaard, Benjamin Smed Korsgaard, Lars Schreiber, Ian P. G. Marshall, Kai Finster and Andreas Schramm

    Standards in Genomic Sciences 2017 12:8

    Published on: 19 January 2017

  11. Extended genome report

    High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia

    Rhizobium mesoamericanum STM6155 (INSCD = ATYY01000000) is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as an effective nitrogen fixing ...

    Agnieszka Klonowska, Aline López-López, Lionel Moulin, Julie Ardley, Margaret Gollagher, Dora Marinova, Rui Tian, Marcel Huntemann, T.B.K. Reddy, Neha Varghese, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Rekha Seshadri, Mohamed N. Baeshen, Nabih A. Baeshen…

    Standards in Genomic Sciences 2017 12:7

    Published on: 17 January 2017

  12. Short genome report

    High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea

    Nakamurella lactea DLS-10T , isolated from rock in Korea, is one of the four type strains of the genus Nakamurella. In this study, we describe the high quality dra...

    Imen Nouioui, Markus Göker, Lorena Carro, Maria del Carmen Montero-Calasanz, Manfred Rohde, Tanja Woyke, Nikos C. Kyrpides and Hans-Peter Klenk

    Standards in Genomic Sciences 2017 12:4

    Published on: 6 January 2017

  13. Short genome report

    Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33T and comparison with related Actinobacteria

    Agromyces aureus AR33T is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead...

    Erika Corretto, Livio Antonielli, Angela Sessitsch, Stéphane Compant, Christoph Höfer, Markus Puschenreiter and Günter Brader

    Standards in Genomic Sciences 2017 12:2

    Published on: 5 January 2017

  14. Short genome report

    Complete genome sequence and whole-genome phylogeny of Kosmotoga pacifica type strain SLHLJ1T from an East Pacific hydrothermal sediment

    Kosmotoga pacifica strain SLHLJ1T is a thermophilic chemoorganoheterotrophic bacterium isolated from a deep-sea hydrothermal sediment. It belongs to the physiologically homogeneous Thermo...

    Lijing Jiang, Stéphane L’Haridon, Mohamed Jebbar, Hongxiu Xu, Karine Alain and Zongze Shao

    Standards in Genomic Sciences 2017 12:3

    Published on: 5 January 2017

  15. Short genome report

    Complete genome sequence of the salmonella enterica serovar enteritidis bacteriophages fSE1C and fSE4C isolated from food matrices

    Salmonella enterica serovar Enteritidis is one of the most common causes of Salmonellosis worldwide. Utilization of bacteriophages as prophylactic agents is a practical solution to preven...

    Javier Santander, Jose I. Vasquez, Cristopher Segovia, Leonardo Santos, Gabriel Turra, Karen Huber and James Robeson

    Standards in Genomic Sciences 2017 12:1

    Published on: 5 January 2017

  16. Short genome report

    Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge

    Actinoalloteichus hymeniacidonis HPA 177T is a Gram-positive, strictly aerobic, black pigment producing and spore-forming actinomycete, which forms branching vegetative hyphae and was iso...

    Lena Schaffert, Andreas Albersmeier, Anika Winkler, Jörn Kalinowski, Sergey B. Zotchev and Christian Rückert

    Standards in Genomic Sciences 2016 11:91

    Published on: 20 December 2016

  17. Short genome report

    Complete genome sequence of new bacteriophage phiE142, which causes simultaneously lysis of multidrug-resistant Escherichia coli O157:H7 and Salmonella enterica

    The emergence of antibiotic-resistant foodborne bacteria is a global health problem that requires immediate attention. Bacteriophages are a promising biotechnological alternative approach against bacterial pat...

    Luis Amarillas, Cristobal Chaidez, Arturo González-Robles and Josefina León-Félix

    Standards in Genomic Sciences 2016 11:89

    Published on: 13 December 2016

  18. Short genome report

    Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria

    Oligoflexus tunisiensis Shr3T is the first strain described in the newest (eighth) class Oligoflexia of the phylum Proteobacteria. This strain was isolated from the 0.2-μm filtrate of a s...

    Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Tomoya Baba, Miyuki Nishijima, Fatma Karray, Sami Sayadi, Hiroko Isoda, Takeshi Naganuma and Hironori Niki

    Standards in Genomic Sciences 2016 11:90

    Published on: 13 December 2016

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