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  1. Extended genome report

    The genome of the cotton bacterial blight pathogen Xanthomonas citri pv. malvacearum strain MSCT1

    Xanthomonas citri pv. malvacearum is a major pathogen of cotton, Gossypium hirsutum L.. In this study we report the complete genome of the X. citri pv. malvacearum strain MSCT1 assembled ...

    Kurt C. Showmaker, Mark A. Arick II, Chuan-Yu Hsu, Brigitte E. Martin, Xiaoqiang Wang, Jiayuan Jia, Martin J. Wubben, Robert L. Nichols, Tom W. Allen, Daniel G. Peterson and Shi-En Lu

    Standards in Genomic Sciences 2017 12:42

    Published on: 24 July 2017

  2. Extended genome report

    Neisseria lactamica Y92–1009 complete genome sequence

    We present the high quality, complete genome assembly of Neisseria lactamica Y92–1009 used to manufacture an outer membrane vesicle (OMV)-based vaccine, and a member of the Neisseria genus. The strain is availabl...

    Anish K. Pandey, David W. Cleary, Jay R. Laver, Martin C. J. Maiden, Xavier Didelot, Andrew Gorringe and Robert C. Read

    Standards in Genomic Sciences 2017 12:41

    Published on: 24 July 2017

  3. Extended genome report

    Draft genome sequences of strains Salinicola socius SMB35T, Salinicola sp. MH3R3–1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia

    Halomonads are moderately halophilic bacteria that are studied as models of prokaryotic osmoadaptation and sources of enzymes and chemicals for biotechnological applications. Despite the progress in understand...

    Björn E. Olsson, Ekaterina S. Korsakova, Lyudmila N. Anan’ina, Anna A. Pyankova, Olga V. Mavrodi, Elena G. Plotnikova and Dmitri V. Mavrodi

    Standards in Genomic Sciences 2017 12:39

    Published on: 19 July 2017

  4. Short genome report

    High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864

    Filamentous fungus Aspergillus niger has high industrial value due to their lignocellulolytic enzyme activities and ATCC 10864 is one of the few type strains of A. niger which has a unique biofilm forming capabil...

    Sujay Paul, Yvette Ludeña, Gretty K. Villena, Fengan Yu, David H. Sherman and Marcel Gutiérrez-Correa

    Standards in Genomic Sciences 2017 12:37

    Published on: 17 July 2017

  5. Short genome report

    Complete genome sequence of Leuconostoc suionicum DSM 20241T provides insights into its functional and metabolic features

    The genome of Leuconostoc suionicum DSM 20241T (=ATCC 9135T = LMG 8159T = NCIMB 6992T) was completely sequenced and its fermentative metabolic pathways were reconstructed to investigate the fermentative propertie...

    Byung Hee Chun, Se Hee Lee, Hye Hee Jeon, Dong-Woon Kim and Che Ok Jeon

    Standards in Genomic Sciences 2017 12:38

    Published on: 17 July 2017

  6. Short genome report

    Chromosomal features of Escherichia coli serotype O2:K2, an avian pathogenic E. coli

    Escherichia coli causing infection outside the gastrointestinal system are referred to as extra-intestinal pathogenic E. coli. Avian pathogenic E. coli is a subgroup of extra-intestinal p...

    Steffen L. Jørgensen, Egle Kudirkiene, Lili Li, Jens P. Christensen, John E. Olsen, Lisa Nolan and Rikke H. Olsen

    Standards in Genomic Sciences 2017 12:33

    Published on: 10 May 2017

  7. Short genome report

    High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

    Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotrop...

    Sivan Laviad-Shitrit, Markus Göker, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke, Hans-Peter Klenk…

    Standards in Genomic Sciences 2017 12:31

    Published on: 8 May 2017

  8. Short genome report

    Genome sequencing and description of Oerskovia enterophila VJag, an agar- and cellulose-degrading bacterium

    A nonmotile, Gram-positive bacterium that shows an elongated and branching cell shape was isolated from soil samples from the botanical garden of Ulm University, Ulm, Germany. Here, the isolation procedure, id...

    Vanessa Jag, Anja Poehlein, Frank R. Bengelsdorf, Rolf Daniel and Peter Dürre

    Standards in Genomic Sciences 2017 12:30

    Published on: 4 May 2017

  9. Extended genome report

    Genome sequencing and analysis of Ralstonia solanacearum phylotype I strains FJAT-91, FJAT-452 and FJAT-462 isolated from tomato, eggplant, and chili pepper in China

    Ralstonia solanacearum is an extremely destructive pathogen able to cause disease in a wide range of host plants. Here we report the draft genome sequences of the strains FJAT-91, FJAT-45...

    Yidan Sun, Keke Wang, Carlos Caceres-Moreno, Wei Jia, Aojun Chen, Heng Zhang, Renyi Liu and Alberto P. Macho

    Standards in Genomic Sciences 2017 12:29

    Published on: 17 April 2017

  10. Short genome report

    Complete genome sequence of Kosakonia oryzae type strain Ola 51T

    Strain Ola 51T (=LMG 24251T = CGMCC 1.7012T) is the type strain of the species Kosakonia oryzae and was isolated from surface-sterilized roots of the wild rice species Oryza latifolia grown in Guangdong, China. H...

    Yuanyuan Li, Shuying Li, Mingyue Chen, Guixiang Peng, Zhiyuan Tan and Qianli An

    Standards in Genomic Sciences 2017 12:28

    Published on: 17 April 2017

  11. Standard operating procedure

    Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing

    The PacBio RS II provides for single molecule, real-time DNA technology to sequence genomes and detect DNA modifications. The starting point for high-quality sequence production is high molecular weight genomi...

    Nguyet Kong, Whitney Ng, Kao Thao, Regina Agulto, Allison Weis, Kristi Spittle Kim, Jonas Korlach, Luke Hickey, Lenore Kelly, Stephen Lappin and Bart C. Weimer

    Standards in Genomic Sciences 2017 12:27

    Published on: 23 March 2017

  12. Extended genome report

    High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr

    Bradyrhizobium elkanii USDA 76T (INSCD = ARAG00000000), the type strain for Bradyrhizobium elkanii, is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an e...

    Wayne Reeve, Peter van Berkum, Julie Ardley, Rui Tian, Margaret Gollagher, Dora Marinova, Patrick Elia, T. B. K. Reddy, Manoj Pillay, Neha Varghese, Rekha Seshadri, Natalia Ivanova, Tanja Woyke, Mohamed N. Baeshen, Nabih A. Baeshen and Nikos Kyrpides

    Standards in Genomic Sciences 2017 12:26

    Published on: 4 March 2017

  13. Short genome report

    High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)

    Anaerobium acetethylicum strain GluBS11T belongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated ...

    Yogita Patil, Nicolai Müller, Bernhard Schink, William B. Whitman, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos Kyrpides…

    Standards in Genomic Sciences 2017 12:24

    Published on: 20 February 2017

  14. Short genome report

    Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

    Hexavalent Chromium [Cr(VI)] is a widespread contaminant found in soil, sediment, and ground water in several DOE sites, including Hanford 100 H area. In order to stimulate microbially mediated reduction of Cr...

    Romy Chakraborty, Hannah Woo, Paramvir Dehal, Robert Walker, Marcin Zemla, Manfred Auer, Lynne A. Goodwin, Alexey Kazakov, Pavel Novichkov, Adam P. Arkin and Terry C. Hazen

    Standards in Genomic Sciences 2017 12:23

    Published on: 8 February 2017

  15. Short genome report

    Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

    Jiangella gansuensis strain YIM 002T is the type strain of the type species of the genus Jiangella, which is at the present time composed of five species, and was isolated from desert soi...

    Jian-Yu Jiao, Lorena Carro, Lan Liu, Xiao-Yang Gao, Xiao-Tong Zhang, Wael N. Hozzein, Alla Lapidus, Marcel Huntemann, T. B. K. Reddy, Neha Varghese, Michalis Hadjithomas, Natalia N. Ivanova, Markus Göker, Manoj Pillay, Jonathan A. Eisen, Tanja Woyke…

    Standards in Genomic Sciences 2017 12:21

    Published on: 3 February 2017

  16. Short genome report

    Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies

    Pseudoalteromonas phage vB_PspS-H40/1 is a lytic phage that infects Pseudoalteromonas sp. strain H40. Both, the phage and its host were isolated in the 1970s from seawater samples collect...

    René Kallies, Bärbel Kiesel, Matthias Schmidt, Johannes Kacza, Nawras Ghanem, Anja Narr, Jakob Zopfi, Lukas Y. Wick, Jörg Hackermüller, Hauke Harms and Antonis Chatzinotas

    Standards in Genomic Sciences 2017 12:20

    Published on: 2 February 2017

  17. Extended genome report

    Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872

    The article provides an overview of the genomic features of Lactobacillus fermentum strain 3872. The genomic sequence reported here is one of three L. fermentum genome sequences completed to date. Comparative gen...

    Burhan Lehri, Alan M. Seddon and Andrey V. Karlyshev

    Standards in Genomic Sciences 2017 12:19

    Published on: 1 February 2017

  18. Short genome report

    Genomic analysis of four strains of Corynebacterium pseudotuberculosis bv. Equi isolated from horses showing distinct signs of infection

    The genomes of four strains (MB11, MB14, MB30, and MB66) of the species Corynebacterium pseudotuberculosis biovar equi were sequenced on the Ion Torrent PGM platform, completely assembled, and their gene content ...

    Rafael A. Baraúna, Rommel T. J. Ramos, Adonney A. O. Veras, Pablo H. C. G. de Sá, Luís C. Guimarães, Diego A. das Graças, Adriana R. Carneiro, Judy M. Edman, Sharon J. Spier, Vasco Azevedo and Artur Silva

    Standards in Genomic Sciences 2017 12:16

    Published on: 31 January 2017

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