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  1. Metagenome report

    Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

    Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes th...

    Patrik D’haeseleer, Jackson Z. Lee, Leslie Prufert-Bebout, Luke C. Burow, Angela M. Detweiler, Peter K. Weber, Ulas Karaoz, Eoin L. Brodie, Tijana Glavina del Rio, Susannah G. Tringe, Brad M. Bebout and Jennifer Pett-Ridge

    Standards in Genomic Sciences 2017 12:67

    Published on: 15 November 2017

  2. Short genome report

    Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

    The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum

    Dong Han Choi, Gwang II Jang, Alla Lapidus, Alex Copeland, T. B. K. Reddy, Supratim Mukherjee, Marcel Huntemann, Neha Varghese, Natalia Ivanova, Manoj Pillay, Brian J. Tindall, Markus Göker, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides and Byung Cheol Cho

    Standards in Genomic Sciences 2017 12:65

    Published on: 30 October 2017

  3. Extended genome report

    First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

    The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and ...

    Emilie E. L. Muller, Shaman Narayanasamy, Myriam Zeimes, Cédric C. Laczny, Laura A. Lebrun, Malte Herold, Nathan D. Hicks, John D. Gillece, James M. Schupp, Paul Keim and Paul Wilmes

    Standards in Genomic Sciences 2017 12:64

    Published on: 18 October 2017

  4. Short genome report

    Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

    This article reports the full genome sequence of Paenibacillus yonginensis DCY84T (KCTC33428, JCM19885), which is a Gram-positive rod-shaped bacterium isolated from humus soil of Yongin Forest in Gyeonggi Provinc...

    Yeon-Ju Kim, Johan Sukweenadhi, Ji Woong Seok, Chang Ho Kang, Eul-Su Choi, Sathiyamoorthy Subramaniyam and Deok Chun Yang

    Standards in Genomic Sciences 2017 12:63

    Published on: 13 October 2017

  5. Extended genome report

    Complete genome sequence of Thermotoga sp. strain RQ7

    Thermotoga sp. strain RQ7 is a member of the family Thermotogaceae in the order Thermotogales. It is a Gram negative, hyperthermophilic, and strictly anaerobic bacterium. It grows on dive...

    Zhaohui Xu, Rutika Puranik, Junxi Hu, Hui Xu and Dongmei Han

    Standards in Genomic Sciences 2017 12:62

    Published on: 11 October 2017

  6. Extended genome report

    Draft genome sequence and characterization of commensal Escherichia coli strain BG1 isolated from bovine gastro-intestinal tract

    Escherichia coli is the most abundant facultative anaerobic bacteria in the gastro-intestinal tract of mammals but can be responsible for intestinal infection due to acquisition of virule...

    Audrey Segura, Pauline Auffret, Christophe Klopp, Yolande Bertin and Evelyne Forano

    Standards in Genomic Sciences 2017 12:61

    Published on: 10 October 2017

  7. Extended genome report

    High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain

    Ensifer meliloti Mlalz-1 (INSDC = ATZD00000000

    Wan Adnawani Meor Osman, Peter van Berkum, Milagros León-Barrios, Encarna Velázquez, Patrick Elia, Rui Tian, Julie Ardley, Margaret Gollagher, Rekha Seshadri, T. B. K. Reddy, Natalia Ivanova, Tanja Woyke, Amrita Pati, Victor Markowitz, Mohamed N. Baeshen, Naseebh Nabeeh Baeshen…

    Standards in Genomic Sciences 2017 12:58

    Published on: 25 September 2017

  8. Extended genome report

    Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile

    Dethiobacter alkaliphilus strain AHT1T is an anaerobic, sulfidogenic, moderately salt-tolerant alkaliphilic chemolithotroph isolated from hypersaline soda lake sediments in northeastern M...

    Emily Denise Melton, Dimitry Y. Sorokin, Lex Overmars, Alla L. Lapidus, Manoj Pillay, Natalia Ivanova, Tijana Glavina del Rio, Nikos C. Kyrpides, Tanja Woyke and Gerard Muyzer

    Standards in Genomic Sciences 2017 12:57

    Published on: 21 September 2017

  9. Short genome report

    Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T

    Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37...

    Diogo N. Proença, William B. Whitman, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides and Paula V. Morais

    Standards in Genomic Sciences 2017 12:53

    Published on: 6 September 2017

  10. Short genome report

    Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis

    Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was s...

    Wah-Seng See-Too, Robson Ee, Yan-Lue Lim, Peter Convey, David A. Pearce, Taznim Begam Mohd Mohidin, Wai-Fong Yin and Kok Gan Chan

    Standards in Genomic Sciences 2017 12:52

    Published on: 6 September 2017

  11. Short genome report

    Complete genome sequence of the sulfur-oxidizing chemolithoautotrophic Sulfurovum lithotrophicum 42BKTT

    A sulfur-oxidizing chemolithoautotrophic bacterium, Sulfurovum lithotrophicum 42BKTT, isolated from hydrothermal sediments in Okinawa, Japan, has been used industrially for CO2 bio-mitigation owing to its ability...

    Wooyoung Jeon, Lia Priscilla, Gyuyeon Park, Heeseok Lee, Narae Lee, Dongyup Lee, Hyuksung Kwon, Iksung Ahn, Changha Lee, Hongweon Lee and Jungoh Ahn

    Standards in Genomic Sciences 2017 12:54

    Published on: 6 September 2017

  12. Extended genome report

    Permanent draft genome sequence of Frankia sp. NRRL B-16219 reveals the presence of canonical nod genes, which are highly homologous to those detected in Candidatus Frankia Dg1 genome

    Frankia sp. NRRL B-16219 was directly isolated from a soil sample obtained from the rhizosphere of Ceanothus jepsonii growing in the USA. Its host plant range includes members of Elaeagna...

    Amir Ktari, Imen Nouioui, Teal Furnholm, Erik Swanson, Faten Ghodhbane-Gtari, Louis S. Tisa and Maher Gtari

    Standards in Genomic Sciences 2017 12:51

    Published on: 4 September 2017

  13. Extended genome report

    Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont

    Bathymodiolus thermophilus, a mytilid mussel inhabiting the deep-sea hydrothermal vents of the East Pacific Rise, lives in symbiosis with chemosynthetic Gammaproteobacteria within its gil...

    Ruby Ponnudurai, Lizbeth Sayavedra, Manuel Kleiner, Stefan E. Heiden, Andrea Thürmer, Horst Felbeck, Rabea Schlüter, Stefan M. Sievert, Rolf Daniel, Thomas Schweder and Stephanie Markert

    Standards in Genomic Sciences 2017 12:50

    Published on: 2 September 2017

  14. Extended genome report

    Draft genome sequences of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from human patients

    Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in...

    Soraya Mendoza-Olazarán, José F. Garcia-Mazcorro, Rayo Morfín-Otero, Licet Villarreal-Treviño, Adrián Camacho-Ortiz, Eduardo Rodríguez-Noriega, Paola Bocanegra-Ibarias, Héctor J. Maldonado-Garza, Scot E. Dowd and Elvira Garza-González

    Standards in Genomic Sciences 2017 12:49

    Published on: 31 August 2017

  15. Extended genome report

    The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction

    Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (4...

    Lucas M. Demey, Caitlin R. Miller, Michael P Manzella, Rachel R. Spurbeck, Sukhinder K. Sandhu, Gemma Reguera and Kazem Kashefi

    Standards in Genomic Sciences 2017 12:47

    Published on: 15 August 2017

  16. Extended genome report

    High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460

    The genetic platforms of Deinococcus species remain the only systems in which massive ionizing radiation (IR)-induced genome damage can be investigated in vivo at exposures commensurate with cellular survival. We...

    Vera Y. Matrosova, Elena K. Gaidamakova, Kira S. Makarova, Olga Grichenko, Polina Klimenkova, Robert P. Volpe, Rok Tkavc, Gözen Ertem, Isabel H. Conze, Evelyne Brambilla, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova…

    Standards in Genomic Sciences 2017 12:46

    Published on: 28 July 2017

  17. Extended genome report

    First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile

    Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile....

    Antonio E. Serrano, Lorena V. Escudero, Cinthya Tebes-Cayo, Mauricio Acosta, Olga Encalada, Sebastián Fernández-Moroso and Cecilia Demergasso

    Standards in Genomic Sciences 2017 12:43

    Published on: 24 July 2017

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