Table 4 Number of genes associated with general COG functional categories
From: Permanent draft genome sequence of Acidiphilium sp. JA12-A1
Code | Value | % age | Description |
|---|---|---|---|
J | 147 | 5.0 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 180 | 6.1 | Transcription |
L | 157 | 5.3 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 167 | 5.7 | Cell cycle control, Cell division, chromosome partitioning |
V | 35 | 1.2 | Defense mechanisms |
T | 77 | 2.6 | Signal transduction mechanisms |
M | 167 | 5.7 | Cell wall/membrane biogenesis |
N | 44 | 1.5 | Cell motility |
U | 77 | 2.6 | Intracellular trafficking and secretion |
O | 107 | 3.6 | Posttranslational modification, protein turnover, chaperones |
C | 260 | 8.8 | Energy production and conversion |
G | 247 | 8.3 | Carbohydrate transport and metabolism |
E | 294 | 10.0 | Amino acid transport and metabolism |
F | 66 | 2.2 | Nucleotide transport and metabolism |
H | 125 | 4.2 | Coenzyme transport and metabolism |
I | 164 | 5.6 | Lipid transport and metabolism |
P | 124 | 4.2 | Inorganic ion transport and metabolism |
Q | 89 | 3.0 | Secondary metabolites biosynthesis, transport and catabolism |
R | 320 | 10.8 | General function prediction only |
S | 241 | 8.2 | Function unknown |
- | 1,400 | 34.4 | Not in COGs |