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Fig. 2 | Standards in Genomic Sciences

Fig. 2

From: Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain

Fig. 2

Phylogenetic tree highlighting the position of two X. arboricola strains (shown in bold) relative to the pathotype strains (PT) of X. arboricola. X. citri subsp. citri str. 306 [64, 65] was used as an outgroup. The tree was built based on the comparison of concatenated nucleotide sequences of seven housekeeping genes (atpD, dnaK, efP, fyuA, glnA, gyrB and rpoD) [3]. Sequences were first aligned and concatenated. The phylogenetic tree was constructed by using MEGA 6.0 software [13] with Maximum Likelihood method based on Tamura-Nei model. Bootstrap values (1,000 replicates) are shown at the branch points. GenBank accession number of X. citri subsp. citri str. 306 genome sequence is shown in parenthesis; accession numbers associated to the housekeeping loci of the pathotype strains can be found in a previous study [3]

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Environmental Microbiome

ISSN: 2524-6372