Table 3 Genome statistics
Attribute | LMG 727 | % | LMG 728 | % | LMG 730 | % |
|---|---|---|---|---|---|---|
Genome size (bp) | 4,754,971 | 100.00 | 4,610,480 | 100.00 | 4,399,523 | 100.00 |
DNA coding (bp) | 4,132,338 | 86.90 | 3,961,227 | 85.91 | 3,805,731 | 86.50 |
DNA G+C (bp) | 3,250,022 | 68.35 | 3,149,419 | 68.31 | 3,007,954 | 68.37 |
DNA scaffolds | 58 | 100.00 | 129 | 100.00 | 84 | 100.00 |
Total genes | 3,933 | 100.00 | 3,906 | 100.00 | 3,803 | 100.00 |
Protein coding genes | 3,878 | 98.6 | 3,851 | 98.6 | 3,749 | 98.6 |
RNA genes | 55 | 1.40 | 55 | 1.40 | 54 | 1.40 |
Pseudo genes | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Genes in internal clusters | 978 | 24.86 | 924 | 23.65 | 876 | 23.03 |
Genes with function prediction | 2,781 | 70.7 | 2,759 | 70.63 | 2,697 | 70.91 |
Genes assigned to COGs | 2,987 | 75.94 | 2,935 | 75.14 | 2,928 | 76.99 |
Genes with Pfam domains | 3,045 | 77.42 | 2,984 | 76.39 | 2,968 | 78.04 |
Genes with signal peptides | 585 | 14.87 | 586 | 15 | 553 | 14.54 |
Genes with transmembrane helices | 954 | 24.25 | 935 | 23.93 | 918 | 24.13 |
CRISPR repeats | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |