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Table 3 Genome statistics

From: Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72

 

Microbacterium sp. H83

Mycobacterium iranicum H39

Plantibacter sp. H53

Pseudomonas oryzihabitans H72

Staphylococcus capitis H36

S. capitis H65

S. cohnii H62

S. hominis H69

Attribute

Value

%a

Value

%

Value

%

Value

%

Value

%

Value

%

Value

%

Value

%

Genome size (bp)

3,531,197

100

6,470,840

100

4,012,045

100

5,316,471

100

2,412,840

100

2,482,551

100

2,656,939

100

2,335,200

100

DNA coding (bp)

3,256,592

92

5,997,369

93

3,678,027

92

4,723,080

89

2,064,637

86

2,146,765

86

2,213,412

83

2,024,342

87

DNA G + C (bp)

2,459,099

70

4,277,463

66

2,783,137

69

3,459,720

65

789,696

33

812,206

33

859,087

32

733,146

31

DNA scaffolds/contigs

52

100

91

100

50

100

78

100

24

100

31

100

262

100

143

100

Total genes

3522

100

6227

100

3826

100

5005

100

2454

100

2476

100

2761

100

2450

100

Protein coding genes

3462

98

6162

99

3763

98

4897

98

2355

96

2378

96

2666

97

2350

96

RNA genes

60

2

65

1

63

2

108

2

99

4

98

4

95

3

100

4

Pseudo genes

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

Genes in internal clusters

874

25

2189

35

1075

28

1487

30

451

18

456

18

593

21

464

19

Genes with function prediction

2637

75

4691

75

2943

77

3969

79

1970

80

1970

80

2151

78

1907

78

Genes assigned to COGs

2271

64

3929

63

2567

67

3605

72

1759

72

1802

73

1877

68

1708

70

Genes with Pfam domains

2783

79

4989

80

3093

81

4209

84

2044

83

2057

83

2231

81

1979

81

Genes with signal peptides

148

4

366

6

164

4

496

10

67

3

70

3

55

2

95

3

Genes with transmembrane helices

953

27

1365

22

1117

29

1138

23

637

26

632

26

671

24

575

23

CRISPR repeats

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

  1. aThe percentage of total is based on either the size of the genome in base pairs or the total number of genes in the annotated genome