Table 5 Number of genes associated with general COG functional categories
From: Genome features of moderately halophilic polyhydroxyalkanoate-producing Yangia sp. CCB-MM3
Code | Value | % age | Description |
|---|---|---|---|
J | 189 | 3.76 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 350 | 6.96 | Transcription |
L | 190 | 3.78 | Replication, recombination and repair |
B | 3 | 0.06 | Chromatin structure and dynamics |
D | 33 | 0.66 | Cell cycle control, cell division, chromosome partitioning |
V | 45 | 0.90 | Defense mechanisms |
T | 153 | 3.04 | Signal transduction mechanisms |
M | 252 | 5.01 | Cell wall/membrane biogenesis |
N | 49 | 0.97 | Cell motility |
U | 55 | 1.09 | Intracellular trafficking and secretion |
O | 139 | 2.77 | Posttranslational modification, protein turnover, chaperones |
C | 276 | 5.49 | Energy production and conversion |
G | 374 | 7.44 | Carbohydrate transport and metabolism |
E | 615 | 12.23 | Amino acid transport and metabolism |
F | 107 | 2.13 | Nucleotide transport and metabolism |
H | 163 | 3.24 | Coenzyme transport and metabolism |
I | 169 | 3.36 | Lipid transport and metabolism |
P | 288 | 5.73 | Inorganic ion transport and metabolism |
Q | 176 | 3.50 | Secondary metabolites biosynthesis, transport and catabolism |
R | 582 | 11.58 | General function prediction only |
S | 348 | 6.92 | Function unknown |
– | 1082 | 21.52 | Not in COGs |