Table 3. Final annotation hierarchy

HMM

Equivalog

N/A

N/A

1

BER

Trusted

Full

Full

2

HMM

Equivalog Domain

Full

Full

3

BER

Trusted

Partial

Full

4

HMM

Subfamily

N/A

N/A

5

HMM

Superfamily

N/A

N/A

6

HMM

Subfamily Domain

N/A

N/A

7

HMM

Domain

Partial

Full

8

HMM

Pfam

Full

Full

9

BER

Trusted

Full

Partial

10

TMHMM

> 5 membrane spans

N/A

N/A

11

LipoP

Presence of prediction

N/A

N/A

12

HMM

Hypothetical Equivalog

N/A

N/A

13

BER

Not trusted

Full

Full

14

BER

Not trusted

Partial

Full

15

BER

Not trusted

Full

Partial

16

BER

With ambiguous term

Full/Partial

Full/Partial

17