Table 2. Description of the contents of the evidence file generated by the VMGAP
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 |
|---|---|---|---|---|---|---|---|---|
ID | CDD_RPS | Subject definition | % cov | % ident | e-value | Â | % ident | Â |
ID | ALL GROUP_PEP | Subject ID | Subject definition | Query length | Subject length | % cov | % ident | e-value |
ID | ACLAME_PEP | Subject ID | Subject definition | Query length | Subject length | % cov | % ident | e-value |
ID | SANGER_PEP | Subject ID | Subject definition | Query length | Subject length | % cov | % ident | e-value |
ID | ENV_NT | Subject ID | Subject definition | Query length | Subject length | % cov | % ident | e-value |
ID | ENV_NR | Subject ID | Subject definition | Query length | Subject length | % cov | HMM description | e-value |
ID | FRAG_HMM | HMM begin | HMM end | % cov | Total e-value | HMM accession | HMM description | HMM length |
ID | PFAM/TIGRFAM_HMM | HMM begin | HMM end | % cov | Total e-value | HMM accession | Â | HMM length |
ID | PRIAM | EC Number | e-value | Â | Â | Â | HMM description | Â |
ID | ACLAME_HMM | HMM begin | HMM end | % cov | Total e-value | HMM accession | Â | HMM length |
ID | PEPSTATS | Molecular weight | Isoelectric point | Â | Â | Â | Â | Â |
ID | TMHMM | Number predicted helixes | Â | Â | Â | Â | Â | Â |
ID | SIGNALP | signal pep | cleavage site position | Â | Â | Â | Â | Â |