Table 4. Number of genes associated with the 25 general COG functional categories
From: Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov.
Code | Value | % age | Description |
|---|---|---|---|
J | 136 | 5.05 | Translation, ribosomal structure and biogenesis |
A | 0 | 0 | RNA processing and modification |
K | 124 | 4.60 | Transcription |
L | 92 | 3.42 | Replication, recombination and repair |
B | 0 | 0 | Chromatin structure and dynamics |
D | 18 | 0.67 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0 | Nuclear structure |
V | 31 | 1.15 | Defense mechanisms |
T | 86 | 3.19 | Signal transduction mechanisms |
M | 191 | 7.10 | Cell wall/membrane biogenesis |
N | 6 | 0.22 | Cell motility |
Z | 0 | 0 | Cytoskeleton |
W | 0 | 0 | Extracellular structures |
U | 32 | 1.19 | Intracellular trafficking and secretion |
O | 62 | 2.30 | Posttranslational modification, protein turnover, chaperones |
C | 112 | 4.16 | Energy production and conversion |
G | 188 | 6.98 | Carbohydrate transport and metabolism |
E | 141 | 5.24 | Amino acid transport and metabolism |
F | 54 | 2.01 | Nucleotide transport and metabolism |
H | 82 | 3.04 | Coenzyme transport and metabolism |
I | 47 | 1.74 | Lipid transport and metabolism |
P | 132 | 4.90 | Inorganic ion transport and metabolism |
Q | 14 | 0.52 | Secondary metabolites biosynthesis, transport and catabolism |
R | 234 | 8.69 | General function prediction only |
S | 96 | 3.57 | Function unknown |
- | 969 | 35.99 | Not in COGs |