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Figure 1. | Standards in Genomic Sciences

Figure 1.

From: Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks

Figure 1.

Phylogenetic tree highlighting the position of S. agalactiae strain SA20-06 in relation to other selected strains of the species and others from the genus Streptococcus. The tree was based on 1,410 characters of the 16S rRNA gene sequence aligned using ClustalW2 [35]. The tree was inferred under the maximum likelihood criterion using MEGA5 software [36] and rooted with 16S rRNA sequence of fish pathogen Lactococcus garvieae (a member of the Streptococcaceae). The branches were mapped by the expected number of substitutions per site. The numbers above the branches are support values from 1,000 bootstrap replicates. The strains and their corresponding GenBank accession numbers (and, when applicable, draft sequence coordinates) for 16S rRNA genes are: S. agalactiae 18rs21, NZ_AAJO01000124; S. agalactiae ATCC13813, NR_040821; S. agalactiae 2603VR, NC_004116; S. agalactiae GB00112, AKXO01000029; S. agalactiae FSL_S3-026, AEXT01000002; S. agalactiae NEM316, AL766845; S. agalactiae SA20-06, NC_019048; S. agalactiae A909, NC_007432; S. agalactiae GD201008-001, CP003810; S. dysgalactiae subsp dysgalactiae ATCC 27957, CM001076; S. iniae 9117, NZ_AMOO01000003; S. parauberis KCT 11537, NC_015558; S. pyogenes alab49, NC_017596; S. pneumoniae ST556, NC_017769; S. thermophilus CNRZ1066, NC_006449; S. macedonicus ACA-DC 198, NC_016749; L. garvieae, AP009332.

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Environmental Microbiome

ISSN: 2524-6372