Table 4. Number of genes associated with the general COG functional categories
From: Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566T
Code | Value | %age | Description |
|---|---|---|---|
J | 180 | 4.36 | Translation, ribosomal structure and biogenesis |
A | 0 | 0 | RNA processing and modification |
K | 326 | 7.89 | Transcription |
L | 186 | 4.50 | Replication, recombination and repair |
B | 2 | 0.05 | Chromatin structure and dynamics |
D | 37 | 0.90 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0 | Nuclear structure |
V | 52 | 1.26 | Defense mechanisms |
T | 161 | 3.90 | Signal transduction mechanisms |
M | 207 | 5.01 | Cell wall/membrane/envelope biogenesis |
N | 54 | 1.31 | Cell motility |
Z | 1 | 0.02 | Cytoskeleton |
W | 0 | 0 | Extracellular structures |
U | 90 | 2.18 | Intracellular trafficking, secretion, and vesicular transport |
O | 160 | 3.87 | Posttranslational modification, protein turnover, chaperones |
C | 265 | 6.41 | Energy production and conversion |
G | 180 | 4.36 | Carbohydrate transport and metabolism |
E | 452 | 10.94 | Amino acid transport and metabolism |
F | 82 | 1.98 | Nucleotide transport and metabolism |
H | 177 | 4.28 | Coenzyme transport and metabolism |
I | 292 | 7.07 | Lipid transport and metabolism |
P | 186 | 4.50 | Inorganic ion transport and metabolism |
Q | 161 | 3.90 | Secondary metabolites biosynthesis, transport and catabolism |
R | 514 | 12.44 | General function prediction only |
S | 367 | 8.88 | Function unknown |
- | 1,154 | 23.51 | Not in COGs |