Table 3. Genome Statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 5,408,301 | 100.00% |
DNA coding region (bp) | 4,926,834 | 91.10% |
DNA G+C content (bp) | 3,771,475 | 69.74% |
Number of replicons | 1 | |
Extrachromosomal elements | 0 | |
Total genes | 5,196 | 100.00% |
RNA genes | 57 | 1.10% |
rRNA operons | 3 | |
tRNA genes | 47 | 0.90% |
Protein-coding genes | 5,139 | 98.90% |
Pseudo genes | 93 | 1.79% |
Genes with function prediction (proteins) | 3,880 | 74.67% |
Genes in paralog clusters | 2,852 | 54.89% |
Genes assigned to COGs | 3,834 | 73.79% |
Genes assigned Pfam domains | 4,014 | 77.25% |
Genes with signal peptides | 1,512 | 29.10% |
Genes with transmembrane helices | 1,206 | 23.21% |
CRISPR repeats | 0 |