Skip to main content

Table 4. Nucleotide content and gene count levels of the genome

From: Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31

Attribute

Value

% of totala

Genome size (bp)

4,856,302

100.00

DNA GC content (bp)

1,821,262

37.50

DNA coding region (bp)

3,924,297

80.81

Number of replicons

1

 

Extrachromosomal

0

 

Total genes

4,938

100

RNA genes

46

0.93

rRNA operons

7

 

tRNA genes

38

0.77

Pseudogenes

1,623

32.87

Protein-coding genes

4,846

98.14

Genes in paralog clusters

658

13.33

Genes assigned to COGs

2,946

59.66

1 or more conserved domains

2,946

59.66

2 or more conserved domains

529

10.71

3 or more conserved domains

98

1.98

Genes with function prediction

3,315

67.13

Genes assigned Pfam domains

2,799

56.68

Genes with signal peptides

1,206

24.42

Genes with transmembrane helices

1,206

24.42

CRISPR repeats

0

0.00

  1. a) The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.