Table 5. Unique functional roles between G. diazotrophicus PAl 5 genome sequences
Roles Unique to JGI | Roles Unique to RioGene |
|---|---|
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) | Sorbitol dehydrogenase (EC 1.1.1.14) |
D-alanine--D-alanine ligase (EC 6.3.2.4) | Transketolase, C-terminal section (EC 2.2.1.1) |
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) | Transketolase, N-terminal section (EC 2.2.1.1) |
Organic hydroperoxide resistance protein | COG0028: Thiamine pyrophosphate-requiring enzymes |
Organic hydroperoxide resistance transcriptional regulator | D-galactonate regulator, IclR family |
Molybdenum cofactor biosynthesis protein B | Epi-inositol hydrolase (EC 3.7.1.-) |
Flagellar biosynthesis protein fliL | Chromosome partition protein smc |
Flagellar hook-associated protein flgL | dTDP-rhamnosyl transferase RfbF (EC 2.-.-.-) |
Deoxyuridine 5′-triphosphate nucleotidohydrolase (EC 3.6.1.23) | Protein of unknown function DUF374 |
Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.-) | Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) |
Leucyl/phenylalanyl-tRNA—protein transferase (EC 2.3.2.6) | DNA repair exonuclease family protein YhaO |
Cysteinyl-tRNA synthetase (EC 6.1.1.16) | ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog |
tRNA:Cm32/Um32 methyltransferase | Outer membrane lipoprotein carrier protein LolA |
| Â | DNA-binding response regulator KdpE |
| Â | Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) |
| Â | Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
| Â | Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
| Â | Beta-hexosaminidase (EC 3.2.1.52) |
| Â | Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
| Â | Protein-export membrane protein secD (TC 3.A.5.1.1) |
| Â | H+/Cl- exchange transporter ClcA |