Table 3 Genome statistics
Attribute | Value | %age of total |
|---|---|---|
Genome size (bp) | 4,449,424 | 100 |
DNA coding (bp) | 3,743,112 | 84.1 |
DNA G + C (bp) | 3,057,506 | 68.7 |
DNA scaffolds | 608 | n/a |
Total genes | 4806 | n/a |
Protein coding genes | 4754 | 98.9 |
RNA genes | 52 | 1.1 |
Pseudo genes | 196 | 4.1 |
Genes in internal clusters | N.D. | N.D. |
Genes with function prediction | 3498 | 72.8 |
Genes assigned to COGs | 3376 | 71.0 |
Genes with Pfam domains | 3395 | 71.4 |
Genes with signal peptides | 381 | 8.0 |
Genes with transmembrane helices | 1014 | 21.3 |
CRISPR repeats | 0 | 0 |