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Standards in Genomic Sciences

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  1. Content type: Correction

    After publication of the original article [1] it was identified that an incorrect version of the manuscript has been published. This was caused by a technical error which led to a discrepancy between the edito...

    Authors: Anish K. Pandey, David W. Cleary, Jay R. Laver, Martin C. J. Maiden, Xavier Didelot, Andrew Gorringe and Robert C. Read

    Citation: Standards in Genomic Sciences 2018 13:4

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    The original article was published in Standards in Genomic Sciences 2017 12:41

  2. Content type: Extended genome report

    In this study, following its isolation from contaminated soil, the genomic sequence of Pseudomonas alcaliphila strain...

    Authors: Jakub Ridl, Jachym Suman, Serena Fraraccio, Miluse Hradilova, Michal Strejcek, Tomas Cajthaml, Andrea Zubrova, Tomas Macek, Hynek Strnad and Ondrej Uhlik

    Citation: Standards in Genomic Sciences 2018 13:3

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  3. Content type: Short genome report

    Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain to...

    Authors: Enjuro Harunari, Hisayuki Komaki, Natsuko Ichikawa, Akira Hosoyama, Akane Kimura, Moriyuki Hamada and Yasuhiro Igarashi

    Citation: Standards in Genomic Sciences 2018 13:2

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  4. Content type: Extended genome report

    Mycobacterium simiae (Karassova V, Weissfeiler J, Kraszanay E, Acta Microbiol Acad Sci Hung 12:275-82, 1965) is a slow-growing nontuberculous Mycobacterium species found in environmental niches, and recently evid...

    Authors: José L. Steffani-Vallejo, Marion E. Brunck, Erika Y. Acosta-Cruz, Rafael Montiel and Francisco Barona-Gómez

    Citation: Standards in Genomic Sciences 2018 13:1

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  5. Content type: Short genome report

    Acuticoccus yangtzensis JL1095T is a proteobacterium from a genus belonging to the family Rhodobacteraceae; it was isolated from surface waters of the Yangtze Estuary, China. This strain displays...

    Authors: Lei Hou, Jia Sun, Xiabing Xie, Nianzhi Jiao and Yao Zhang

    Citation: Standards in Genomic Sciences 2017 12:91

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  6. Content type: Extended genome report

    Brucellosis is a commonly diagnosed zoonosis that causes infertility and abortion in cattle, it is acquired from handling of infected animals or consuming contaminated milk or milk products. In Colombia, it be...

    Authors: Mauricio Pacheco-Montealegre, Rocío E. Patiño, Ligia Torres, Sabrina Jiménez, José Luis Rodríguez and Alejandro Caro-Quintero

    Citation: Standards in Genomic Sciences 2017 12:89

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  7. Content type: Short genome report

    Croceicoccus marinus E4A9Twas isolated from deep-sea sediment collected from the East Pacific polymetallic nodule area. The strain is able to produce esterase, which is widely used in the...

    Authors: Yue-Hong Wu, Hong Cheng, Ying-Yi Huo, Lin Xu, Qian Liu, Chun-Sheng Wang and Xue-Wei Xu

    Citation: Standards in Genomic Sciences 2017 12:88

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  8. Content type: Extended genome report

    A bacterium belonging to the phylum Synergistetes, genus Dethiosulfovibrio was isolated in 2007 from a saline spring in Colombia. Dethiosulfovibrio salsuginis USBA 82T (DSM 21565 ...

    Authors: Carolina Díaz-Cárdenas, Gina López, José David Alzate-Ocampo, Laura N. González, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides, Silvia Restrepo and Sandra Baena

    Citation: Standards in Genomic Sciences 2017 12:86

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  9. Content type: Short genome report

    Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum st...

    Authors: Outi Niemi, Pia Laine, Patrik Koskinen, Miia Pasanen, Ville Pennanen, Heidi Harjunpää, Johanna Nykyri, Liisa Holm, Lars Paulin, Petri Auvinen, E. Tapio Palva and Minna Pirhonen

    Citation: Standards in Genomic Sciences 2017 12:87

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  10. Content type: Meeting report

    Due to significant declines in the price of genome sequencing technology, the bioinformatics sciences are experiencing a massive upswing in data generation resulting in an increasing need for data distribution...

    Authors: Kathryn Petersen Mace, Daniel Jacobson, Brooklin Gore, Lauren Rotman, Jennifer Schopf, Mary Hester, Predrag Radulovic and William Barnett

    Citation: Standards in Genomic Sciences 2017 12:83

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  11. Content type: Extended genome report

    Acidithiobacillus thiooxidans CLST is an extremely acidophilic gamma-proteobacteria that was...

    Authors: Raquel Quatrini, Lorena V. Escudero, Ana Moya-Beltrán, Pedro A. Galleguillos, Francisco Issotta, Mauricio Acosta, Juan Pablo Cárdenas, Harold Nuñez, Karina Salinas, David S. Holmes and Cecilia Demergasso

    Citation: Standards in Genomic Sciences 2017 12:84

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  12. Content type: Short genome report

    A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic ph...

    Authors: Ananda Shankar Bhattacharjee, Amir Mohaghegh Motlagh, Eddie B. Gilcrease, Md Imdadul Islam, Sherwood R. Casjens and Ramesh Goel

    Citation: Standards in Genomic Sciences 2017 12:82

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  13. Content type: Short genome report

    Paraburkholderia caballeronis is a plant-associated bacterium. Stra...

    Authors: Fernando Uriel Rojas-Rojas, Erika Yanet Tapia-García, Maskit Maymon, Ethan Humm, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides, Tanja Woyke…

    Citation: Standards in Genomic Sciences 2017 12:80

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  14. Content type: Extended genome report

    Archaeoglobus fulgidus is the type species of genus Archaeoglobus Stetter 1998, a hyperthermophilic sulfate reducing group within the Archaeoglobi class of the euryarchaeota phylum. Membe...

    Authors: Nils-Kåre Birkeland, Peter Schönheit, Lianna Poghosyan, Anne Fiebig and Hans-Peter Klenk

    Citation: Standards in Genomic Sciences 2017 12:79

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  15. Content type: Extended genome report

    Here we present the physiological features of Pseudomonas extremaustralis strain USBA-GBX-515 (CMPUJU 515), isolated from soils in Superparamo ecosystems, > 4000 m.a.s.l, in the northern Andes of South America, a...

    Authors: Gina López, Carolina Diaz-Cárdenas, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides, J. David Alzate, Laura N. González, Silvia Restrepo and Sandra Baena

    Citation: Standards in Genomic Sciences 2017 12:78

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  16. Content type: Report

    Acidithiobacillus albertensis is an extremely acidophilic, mesophilic, obligatory autotrophic sulfur-oxidizer, with potential importance in the bioleaching of sulfidic metal ores, first d...

    Authors: Matías Castro, Ana Moya-Beltrán, Paulo C. Covarrubias, Mónica Gonzalez, Juan Pablo Cardenas, Francisco Issotta, Harold Nuñez, Lillian G. Acuña, Gonzalo Encina, David S. Holmes, D. Barrie Johnson and Raquel Quatrini

    Citation: Standards in Genomic Sciences 2017 12:77

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  17. Content type: Extended genome report

    Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain form...

    Authors: Marianna Nagymihály, Bálint M. Vásarhelyi, Quentin Barrière, Teik-Min Chong, Balázs Bálint, Péter Bihari, Kar-Wai Hong, Balázs Horváth, Jamal Ibijbijen, Mohammed Amar, Attila Farkas, Éva Kondorosi, Kok-Gan Chan, Véronique Gruber, Pascal Ratet, Peter Mergaert…

    Citation: Standards in Genomic Sciences 2017 12:75

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  18. Content type: Extended genome report

    A Bacillus velezensis strain from the rhizosphere of Sporobolus airoides (Torr.) Torr., a grass in central-north México, was isolated during a biocontrol of phytopathogens scrutiny study. The 2A-2B strain exhibit...

    Authors: Inés Martínez-Raudales, Yumiko De La Cruz-Rodríguez, Alejandro Alvarado-Gutiérrez, Julio Vega-Arreguín, Ahuitz Fraire-Mayorga, Miguel Alvarado-Rodríguez, Victor Balderas-Hernández and Saúl Fraire-Velázquez

    Citation: Standards in Genomic Sciences 2017 12:73

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  19. Content type: Extended genome report

    Crude oil contamination of soils and waters is a worldwide problem, which has been actively addressed in recent years. Sequencing genomes of microorganisms involved in the degradation of hydrocarbons have allo...

    Authors: Laura T. Morales, Laura N. González-García, María C. Orozco, Silvia Restrepo and Martha J. Vives

    Citation: Standards in Genomic Sciences 2017 12:71

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  20. Content type: Extended genome report

    Butyrivibrio hungatei MB2003 was isolated from the plant-adherent fraction of rumen contents from a pasture-grazed New Zealand dairy cow, and was selected for genome sequencing in order t...

    Authors: Nikola Palevich, William J. Kelly, Sinead C. Leahy, Eric Altermann, Jasna Rakonjac and Graeme T. Attwood

    Citation: Standards in Genomic Sciences 2017 12:72

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