Table 3 Genome statistics
Attribute | Value | % of Totala |
|---|---|---|
Genome size (bp) | 4,782,107 | 100.00 |
DNA coding (bp) | 4,218,785 | 88.22 |
DNA G + C (bp) | 2,424,397 | 50.70 |
DNA scaffolds | 84 | |
Total genes | 4562 | 100.00 |
Protein coding genes | 4465 | 97.88 |
RNA genes | 97 | 2.13 |
Pseudo genes | 22 | 0.48 |
Genes in internal clusters | 1171 | 25.67 |
Genes with function prediction | 3831 | 83.98 |
Genes assigned to COGs | 3814 | 83.60 |
Genes with Pfam domains | 275 | 6.03 |
Genes with signal peptides | 174 | 3.81 |
Genes with transmembrane helices | 1080 | 23.67 |
CRISPR repeats | 2 |