Table 12 Number of genes associated with general KOG functional categories for the C. boidinii strains UNISS-Cb18, UNISS-Cb60, TOMC-Y13, and TOMC-Y47
Code | UNISS-Cb18 | UNISS-Cb60 | TOMC-Y13 | TOMC-Y47 | Description | ||||
|---|---|---|---|---|---|---|---|---|---|
Value | %age | Value | %age | Value | %age | Value | %age | ||
J | 387 | 6.33 | 384 | 6.22 | 393 | 6.2 | 397 | 6.27 | Translation, ribosomal structure and biogenesis |
A | 271 | 4.43 | 267 | 4.33 | 267 | 4.21 | 273 | 4.31 | RNA processing and modification |
K | 654 | 10.7 | 657 | 10.65 | 678 | 10.69 | 683 | 10.8 | Transcription |
L | 196 | 3.21 | 196 | 3.18 | 208 | 3.28 | 206 | 3.26 | Replication, recombination and repair |
B | 103 | 1.69 | 106 | 1.72 | 114 | 1.8 | 115 | 1.82 | Chromatin structure and dynamics |
D | 280 | 4.58 | 281 | 4.55 | 309 | 4.87 | 312 | 4.93 | Cell cycle control, cell division, chromosome partitioning |
Y | 40 | 0.65 | 39 | 0.63 | 43 | 0.68 | 42 | 0.66 | Nuclear structure |
V | 36 | 0.59 | 36 | 0.58 | 33 | 0.52 | 34 | 0.54 | Defence mechanisms |
T | 384 | 6.28 | 382 | 6.19 | 374 | 5.9 | 376 | 5.94 | Signal transduction mechanisms |
M | 57 | 0.93 | 58 | 0.94 | 66 | 1.04 | 62 | 0.98 | Cell wall/membrane/envelope biogenesis |
N | 3 | 0.05 | 3 | 0.05 | 2 | 0.03 | 2 | 0.03 | Cell motility |
Z | 166 | 2.72 | 163 | 2.64 | 169 | 2.66 | 170 | 2.69 | Cytoskeleton |
W | 11 | 0.18 | 9 | 0.15 | 10 | 0.16 | 10 | 0.16 | Extracellular structures |
U | 366 | 5.99 | 365 | 5.91 | 370 | 5.83 | 369 | 5.83 | Intracellular trafficking, secretion, and vesicular transport |
O | 461 | 7.54 | 462 | 7.49 | 472 | 7.44 | 468 | 7.4 | Post-translational modification, protein turnover, chaperones |
C | 232 | 3.8 | 232 | 3.76 | 236 | 3.72 | 240 | 3.79 | Energy production and conversion |
G | 184 | 3.01 | 184 | 2.98 | 187 | 2.95 | 187 | 2.96 | Carbohydrate transport and metabolism |
E | 248 | 4.06 | 252 | 4.08 | 252 | 3.97 | 253 | 4 | Amino acid transport and metabolism |
F | 71 | 1.16 | 71 | 1.15 | 74 | 1.17 | 74 | 1.17 | Nucleotide transport and metabolism |
H | 89 | 1.46 | 90 | 1.46 | 92 | 1.45 | 91 | 1.44 | Coenzyme transport and metabolism |
I | 181 | 2.96 | 180 | 2.92 | 181 | 2.85 | 181 | 2.86 | Lipid transport and metabolism |
P | 126 | 2.06 | 128 | 2.07 | 137 | 2.16 | 142 | 2.24 | Inorganic ion transport and metabolism |
Q | 92 | 1.51 | 92 | 1.49 | 110 | 1.73 | 108 | 1.71 | Secondary metabolites biosynthesis, transport and catabolism |
R | 643 | 10.52 | 645 | 10.45 | 643 | 10.14 | 646 | 10.21 | General function prediction only |
S | 299 | 4.89 | 300 | 4.86 | 298 | 4.7 | 295 | 4.66 | Function unknown |
X | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Multiple functions |
– | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Not in KOGs |