Table 13 Number of genes associated with general KOG functional categories for the C. boidinii strains DBVPG6799, DBVPG7578, DBVPG8035, and NDK27A1
Code | DBVPG6799 | DBVPG7578 | DBVPG8035 | NDK27A1 | Description | ||||
|---|---|---|---|---|---|---|---|---|---|
Value | %age | Value | %age | Value | %age | Value | %age | ||
J | 379 | 6.14 | 393 | 6.24 | 385 | 6.16 | 392 | 6.39 | Translation, ribosomal structure and biogenesis |
A | 281 | 4.56 | 272 | 4.32 | 269 | 4.3 | 272 | 4.44 | RNA processing and modification |
K | 663 | 10.75 | 689 | 10.93 | 693 | 11.08 | 654 | 10.67 | Transcription |
L | 197 | 3.19 | 205 | 3.25 | 202 | 3.23 | 197 | 3.21 | Replication, recombination and repair |
B | 105 | 1.7 | 110 | 1.75 | 111 | 1.78 | 106 | 1.73 | Chromatin structure and dynamics |
D | 293 | 4.75 | 303 | 4.81 | 296 | 4.73 | 292 | 4.76 | Cell cycle control, cell division, chromosome partitioning |
Y | 39 | 0.63 | 42 | 0.67 | 38 | 0.61 | 44 | 0.72 | Nuclear structure |
V | 32 | 0.52 | 35 | 0.56 | 35 | 0.56 | 35 | 0.57 | Defence mechanisms |
T | 388 | 6.29 | 387 | 6.14 | 383 | 6.13 | 374 | 6.1 | Signal transduction mechanisms |
M | 53 | 0.86 | 66 | 1.05 | 69 | 1.1 | 56 | 0.91 | Cell wall/membrane/envelope biogenesis |
N | 3 | 0.05 | 2 | 0.03 | 2 | 0.03 | 3 | 0.05 | Cell motility |
Z | 172 | 2.79 | 169 | 2.68 | 171 | 2.73 | 165 | 2.69 | Cytoskeleton |
W | 11 | 0.18 | 12 | 0.19 | 9 | 0.14 | 9 | 0.15 | Extracellular structures |
U | 366 | 5.93 | 367 | 5.82 | 364 | 5.82 | 366 | 5.97 | Intracellular trafficking, secretion, and vesicular transport |
O | 465 | 7.54 | 477 | 7.57 | 482 | 7.71 | 458 | 7.47 | Post-translational modification, protein turnover, chaperones |
C | 233 | 3.78 | 239 | 3.79 | 237 | 3.79 | 233 | 3.8 | Energy production and conversion |
G | 188 | 3.05 | 187 | 2.97 | 185 | 2.96 | 183 | 2.98 | Carbohydrate transport and metabolism |
E | 246 | 3.99 | 251 | 3.98 | 253 | 4.05 | 253 | 4.13 | Amino acid transport and metabolism |
F | 70 | 1.13 | 75 | 1.19 | 74 | 1.18 | 71 | 1.16 | Nucleotide transport and metabolism |
H | 89 | 1.44 | 92 | 1.46 | 94 | 1.5 | 92 | 1.5 | Coenzyme transport and metabolism |
I | 179 | 2.9 | 180 | 2.86 | 180 | 2.88 | 180 | 2.94 | Lipid transport and metabolism |
P | 127 | 2.06 | 139 | 2.21 | 140 | 2.24 | 126 | 2.05 | Inorganic ion transport and metabolism |
Q | 92 | 1.49 | 112 | 1.78 | 102 | 1.63 | 91 | 1.48 | Secondary metabolites biosynthesis, transport and catabolism |
R | 640 | 10.37 | 652 | 10.35 | 652 | 10.43 | 638 | 10.4 | General function prediction only |
S | 289 | 4.68 | 297 | 4.71 | 293 | 4.69 | 298 | 4.86 | Function unknown |
X | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Multiple functions |
– | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Not in KOGs |