Table 2 α- and β-diversity analysis results by coral species
Species | Rarefaction | α-Diversity | β-diversity | ||
|---|---|---|---|---|---|
Observed ASVs (mean ± SE) | Inverse Simpson | Shannon | PERMANOVA (weighted UniFrac matrix) | ||
A. loripes | 737 (removed 106 ASVs) | NA 24 ± 2 (n = 46) | PMA (F(1,35) = 12.52, p = 0.0012) | PMA (F(1,35) = 15.75, p = 0.0003) | PMA (F(1,45) = 24.15, p = 0.0001) |
Figure 1A | Figure 1B | Figure 1C | Figure 2A, B | ||
A. millepora | 2184 (removed 6 samples and 309 ASVs) | NA 50 ± 10 (n = 43) | NA | Genotype (F(3,34) = 6.44, p = 0.0014) | NA Additional file 2: Fig. S4A |
A. kenti | 9895 (Removed 3 samples and 151 ASVs) | Genotype (F(3,29) = 8.24, p = 0.0004) A-568 ± 113 (n = 9) B-213 ± 39 (n = 10) C-211 ± 55 (n = 8) D-135 ± 23 (n = 10) | Genotype (F(3,29) = 15.43, p < 0.0001) | Genotype (F(3,29) = 14.27, p < 0.0001) | Genotype (F(3,39) = 11.52, p = 0.001) |
Additional file 2: Fig. S3A | Additional file 2: Fig. S3B | Additional file 2: Fig. S3C | Additional file 2: Fig. S4B | ||
P. acuta | 883 (removed 2 samples and 66 ASVs) | NA 20 ± 2 (n = 48) | NA | NA | PMA (F(1,49) = 1.88, p = 0.0106) Figure 2C-D |
P. daedalea | 10,489 (removed 5 samples and 243 ASVs) | Genotype (F(4,31) = 3.17, p = 0.0271) A-293 ± 17 (n = 10) B-234 ± 50 (n = 10) C-76 ± 18 (n = 8) D-178 ± 76 (n = 9) E-75 ± 46 (n = 4) | Genotype (F(4,31) = 8.46, p = 0.0001) | Genotype (F(4,31) = 3.40, p = 0.0203) | Genotype (F(4,45) = 52.88, p = 0.001) |
Additional file 2: Fig. S3D | Additional file 2: Fig. S3E | Additional file 2: Fig. S3F | Additional file 2: Fig. S4C | ||
P. lutea | 4390 (removed 9 samples and 302 ASVs) | NA 180 ± 22 (n = 41) | NA | NA | Genotype (F(4,49) = 3.30, p = 0.001) Additional file 2: Fig. S4D |