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Table 1. Classification and general features of D. fermentans NS114T based on the MIGS recommendations [7]

From: Complete genome sequence of Dyadobacter fermentans type strain (NS114T)

MIGS ID

Property

Term

Evidence code

 

Current classification

Domain Bacteria

TAS [6]

 

Phylum ‘Bacteroidetes

TAS [6]

 

Class ‘Sphingobacteria

TAS [6]

 

Order ‘Sphingobacteriales

TAS [6]

 

Family Cytophagaceae

TAS [8]

 

Genus Dyadobacter

TAS [1]

 

Species Dyadobacter fermentans

TAS [1]

 

Type strain NS114

 
 

Gram stain

negative

TAS [1]

 

Cell shape

rods in pairs or chains

TAS [1]

 

Motility

nonmotile

TAS [1]

 

Sporulation

non-sporulating

TAS [1]

 

Temperature range

mesophilic

TAS [1]

 

Optimum temperature

not reported

TAS [1]

 

Salinity

tolerates up to 15g NaCl/L

TAS [1]

MIGS-22

Oxygen requirement

essentially aerobic

 
 

Carbon source

carbohydrates such as sugars, glucose and sucrose, sugar alcohols and carbonic acids but no polymers such as starch, cellulose or gelatin

TAS [1]

 

Energy source

glucose and sucrose by fermentation aerobically, no acid production from glucose detectable

TAS [1]

MIGS-6

Habitat

endophytic in stems of maize plants cysts of nematode Heterodera glycines contaminated soil

TAS [1, 12, 9]

MIGS-15

Biotic relationship

free-living

 

MIGS-14

Pathogenicity

none

TAS [1]

 

Biosafety level

1

TAS [10]

 

Isolation

surface sterilized stems of maize plants grown in sterile soil without nitrogen fertilizer under green house conditions

TAS [1]

MIGS-4

Geographic location

Madison-Wisconsin; USA

NAS

MIGS-5

Sample collection time

not reported

 

MIGS-4.1

Latitude, Longitude

43.1, 89.4

NAS

MIGS-4.2

   

MIGS-4.3

Depth

Not reported

 

MIGS-4.4

Altitude

Not reported

 
  1. Evidence codes - IDA: Inferred from Direct Assay (first time in publication); TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [11]. If the evidence code is IDA the property was directly observed for a live isolate by one of the authors or an expert mentioned in the acknowledgements.