Table 4. Number of genes associated with the general COG functional categories
From: Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)
Code | value | %age | Description |
|---|---|---|---|
J | 168 | 4.7 | Translation, ribosomal structure and biogenesis |
A | 3 | 0.1 | RNA processing and modification |
K | 211 | 5.9 | Transcription |
L | 276 | 7.7 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 48 | 1.3 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 70 | 2.0 | Defense mechanisms |
T | 208 | 5.8 | Signal transduction mechanisms |
M | 266 | 7.4 | Cell wall/membrane/envelope biogenesis |
N | 56 | 1.6 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 102 | 2.9 | Intracellular trafficking, secretion, and vesicular transport |
O | 162 | 4.5 | Posttranslational modification, protein turnover, chaperones |
C | 289 | 8.1 | Energy production and conversion |
G | 127 | 3.6 | Carbohydrate transport and metabolism |
E | 210 | 5.9 | Amino acid transport and metabolism |
F | 59 | 1.7 | Nucleotide transport and metabolism |
H | 143 | 4.0 | Coenzyme transport and metabolism |
I | 82 | 2.3 | Lipid transport and metabolism |
P | 196 | 5.5 | Inorganic ion transport and metabolism |
Q | 58 | 1.6 | Secondary metabolites biosynthesis, transport and catabolism |
R | 407 | 11.4 | General function prediction only |
S | 437 | 12.2 | Function unknown |
- | 1,319 | 28.7 | Not in COGs |