Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)
Code | Value | % age | Description |
|---|---|---|---|
J | 128 | 9.3 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 85 | 6.2 | Transcription |
L | 72 | 5.3 | Replication, recombination and repair |
B | 1 | 0.1 | Chromatin structure and dynamics |
D | 18 | 1.3 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 42 | 3.1 | Defense mechanisms |
T | 46 | 3.4 | Signal transduction mechanisms |
M | 70 | 5.1 | Cell wall/membrane biogenesis |
N | 1 | 0.1 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 20 | 1.5 | Intracellular trafficking and secretion |
O | 44 | 3.2 | Posttranslational modification, protein turnover, chaperones |
C | 44 | 3.2 | Energy production and conversion |
G | 115 | 8.4 | Carbohydrate transport and metabolism |
E | 105 | 7.7 | Amino acid transport and metabolism |
F | 53 | 3.9 | Nucleotide transport and metabolism |
H | 37 | 2.7 | Coenzyme transport and metabolism |
I | 23 | 1.7 | Lipid transport and metabolism |
P | 59 | 4.3 | Inorganic ion transport and metabolism |
Q | 11 | 0.8 | Secondary metabolites biosynthesis, transport and catabolism |
R | 125 | 9.1 | General function prediction only |
S | 90 | 6.6 | Function unknown |
- | 273 | 19.9 | Not in COGs |