From: Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects
Species/subspecies | 16S rRNA accession [32] | Phylum [36] | bRPD | uRPD | Category |
---|---|---|---|---|---|
Caldisericum exile | AB428365 | Caldiserica | 0.1841 | 0.1968 | Targeted elsewhere |
Asteroleplasma anaerobium | M22351 | Tenericutes | 0.1747 | 0.1936 | Not at DSMZ |
Phycisphaera mikurensis | AB447464 | Planctomycetes | 0.1703 | 0.1960 | Targeted elsewhere |
Ktedonobacter racemifer | AM180156 | Chloroflexi | 0.1646 | 0.1839 | Targeted in GEBA pilot project |
Fibrobacter succinogenes subsp. succinogenes | AJ496032 | Fibrobacteres | 0.1604 | 0.1586 | Completed elsewhere |
Exilispira thermophila | AB364473 | Spirochaetes | 0.1581 | 0.1709 | Not at DSMZ |
Bdellovibrio bacteriovorus | AJ292759 | Proteobacteria | 0.1575 | 0.1684 | Completed elsewhere |
Flexibacter litoralis | AB078056 | Bacteroidetes | 0.1547 | 0.1589 | Targeted in GEBA pilot project |
Lactobacillus catenaformis | AJ621549 | Firmicutes | 0.1541 | 0.1382 | Selected |
Lentisphaera araneosa | AY390428 | Lentisphaerae | 0.1526 | 0.1601 | Targeted elsewhere |
Gemmatimonas aurantiaca | AB072735 | Gemmatimonadetes | 0.1461 | 0.1555 | Completed elsewhere |
Dehalogenimonas lykanthroporepellens | EU679419 | Chloroflexi | 0.1460 | 0.1681 | Completed elsewhere |
Zavarzinella formosa | AM162406 | Planctomycetes | 0.1440 | 0.1466 | Selected |
Gemmata obscuriglobus | X56305 | Planctomycetes | 0.1411 | 0.1437 | Targeted elsewhere |
Victivallis vadensis | AY049713 | Lentisphaerae | 0.1410 | 0.1485 | Targeted elsewhere |
Peredibacter starrii | AF084852 | Proteobacteria | 0.1406 | 0.1395 | In progress elsewhere |
Thermodesulfobium narugense | AB077817 | Firmicutes | 0.1377 | 0.1670 | Targeted in GEBA pilot project |
Nitrospira moscoviensis | X82558 | Nitrospira | 0.1363 | 0.1424 | In progress elsewhere |
Hydrogenobaculum acidophilum | D16296 | Aquificae | 0.1360 | 0.1707 | Postponed for technical reasons |
Fibrobacter intestinalis | AJ496284 | Fibrobacteres | 0.1358 | 0.1341 | Not at DSMZ |