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Table 6. Percentage of genes associated with the 25 general COG functional categories for Fenollaria massiliensis and Peptoniphilus sp. oral taxon 386 str. F0131.

From: Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium

Code

COG description

F. massiliensis

Peptoniphilus sp.

%Difference

J

Translation

9.86

10.01

1.5

A

RNA processing and modification

0.23

0.71

208.7

K

Transcription

6.25

6.52

4.3

L

Replication, recombination and repair

7.57

6.85

−9.5

B

Chromatin structure and dynamics

0.23

0.39

69.6

D

Cell cycle control, mitosis and meiosis

2.06

2.0

−2.9

Y

Nuclear structure

0.06

0

−100

V

Defense mechanisms

4.93

2.84

−42.4

T

Signal transduction mechanisms

2.92

2.97

1.7

M

Cell wall/membrane biogenesis

4.64

4.2

−9.5

N

Cell motility

0.8

1.1

37.5

Z

Cytoskeleton

0.11

0.19

72.7

W

Extracellular structures

0

0

0

U

Intracellular trafficking and secretion

2.06

2.84

37.9

O

Posttranslational modification, protein turnover, chaperones

3.9

4.26

9.2

C

Energy production and conversion

5.62

5.62

0

G

Carbohydrate transport and metabolism

4.13

2.65

−35.8

E

Amino acid transport and metabolism

6.36

7.56

18.9

F

Nucleotide transport and metabolism

3.1

3.94

27.1

H

Coenzyme transport and metabolism

4.19

2.78

−33.7

I

Lipid transport and metabolism

1.72

2.97

72.7

P

Inorganic ion transport and metabolism

5.96

4.78

−19.8

Q

Secondary metabolites biosynthesis, transport and catabolism

0.63

1.36

115.9

R

General function prediction only

11.7

11.56

−1.2

S

Function unknown

10.95

11.89

8.6

-

Not in COGs

1.49

1.29

8.6

  1. Some COGs contain significantly more genes as “RNA processing and modification” (+208,7%) or “Secondary metabolites biosynthesis, transport and catabolism” (+115,9%), whereas others contain less genes as “Nuclear structure” (−100%) or “Defense mechanisms” (−42,4%).