Table 3. Genome statistics
Attribute | Number | % of Total |
|---|---|---|
Genome size (bp) | 4,650,996 | 100.00 |
DNA coding region (bp) | 3,929,972 | 84.50 |
DNA G+C content (bp) | 2,898,874 | 62.33 |
Number of replicons | 3 | |
Extrachromosomal elements | 2 | |
Total genes | 4,596 | 100.00 |
RNA genes | 81 | 1.76 |
rRNA operons | 5 | |
tRNA genes | 62 | 1.35 |
Protein-coding genes | 4,515 | 98.24 |
Pseudo genes | 293 | 6.38 |
Genes with function prediction | 3,558 | 77.42 |
Genes in paralog clusters | 1,675 | 36.44 |
Genes assigned to COGs | 3,493 | 76.00 |
Genes assigned Pfam domains | 3,567 | 77.61 |
Genes with signal peptides | 1,470 | 31.98 |
Genes with transmembrane helices | 867 | 18.86 |
CRISPR repeats | 0 |