Table 4. Number of protein coding genes of Rhizobium leguminosarum bv. trifolii TA1 associated with the general COG functional categories.
From: Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
Code | Value | %age | COG Category |
|---|---|---|---|
J | 247 | 3.29 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.01 | RNA processing and modification |
K | 751 | 10.01 | Transcription |
L | 317 | 4.23 | Replication, recombination and repair |
B | 3 | 0.04 | Chromatin structure and dynamics |
D | 44 | 0.59 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.00 | Nuclear structure |
V | 92 | 1.23 | Defense mechanisms |
T | 402 | 5.36 | Signal transduction mechanisms |
M | 365 | 4.87 | Cell wall/membrane biogenesis |
N | 100 | 1.33 | Cell motility |
Z | 2 | 0.03 | Cytoskeleton |
W | 0 | 0.00 | Extracellular structures |
U | 114 | 1.52 | Intracellular trafficking and secretion |
O | 217 | 2.89 | Posttranslational modification, protein turnover, chaperones |
C | 384 | 5.12 | Energy production conversion |
G | 746 | 9.95 | Carbohydrate transport and metabolism |
E | 803 | 10.71 | Amino acid transport metabolism |
F | 134 | 1.79 | Nucleotide transport and metabolism |
H | 235 | 3.13 | Coenzyme transport and metabolism |
I | 271 | 3.61 | Lipid transport and metabolism |
P | 374 | 4.99 | Inorganic ion transport and metabolism |
Q | 201 | 2.68 | Secondary metabolite biosynthesis, transport and catabolism |
R | 976 | 13.02 | General function prediction only |
S | 720 | 9.60 | Function unknown |
- | 1,903 | 22.19 | Not in COGS |