Table 4. Number of genes associated with the general COG functional categories
From: Complete genome of the switchgrass endophyte Enterobacter clocace P101
Code | Value | %agea | Description |
|---|---|---|---|
J | 195 | 3.8 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 432 | 8.4 | Transcription |
L | 209 | 4.0 | Replication, recombination and repair |
B | 0 | 0.0 | Chromatin structure and dynamics |
D | 35 | 0.7 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 56 | 1.1 | Defense mechanisms |
T | 240 | 4.6 | Signal transduction mechanisms |
M | 259 | 5.0 | Cell wall/membrane/envelope biogenesis |
N | 159 | 3.1 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 141 | 2.7 | Intracellular trafficking, secretion, and vesicular transport |
O | 145 | 2.8 | Posttranslational modification, protein turnover, chaperones |
C | 234 | 4.5 | Energy production and conversion |
G | 445 | 8.6 | Carbohydrate transport and metabolism |
E | 385 | 7.5 | Amino acid transport and metabolism |
F | 88 | 1.7 | Nucleotide transport and metabolism |
H | 167 | 3.2 | Coenzyme transport and metabolism |
I | 121 | 2.3 | Lipid transport and metabolism |
P | 234 | 4.5 | Inorganic ion transport and metabolism |
Q | 90 | 1.7 | Secondary metabolites biosynthesis, transport and catabolism |
R | 515 | 10.0 | General function prediction only |
S | 428 | 8.3 | Function unknown |
- | 343 | 11.3 | Not in COGs |