Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Saccharomonospora viridis type strain (P101T)
Code | Value | % | Description |
|---|---|---|---|
J | 158 | 4.0 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 276 | 7.1 | Transcription |
L | 125 | 3.2 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 25 | 0.6 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 44 | 1.1 | Defense mechanisms |
T | 146 | 3.7 | Signal transduction mechanisms |
M | 125 | 3.2 | Cell wall/membrane biogenesis |
N | 2 | 0.1 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 27 | 0.7 | Intracellular trafficking and secretion |
O | 107 | 2.7 | Posttranslational modification, protein turnover, chaperones |
C | 214 | 5.5 | Energy production and conversion |
G | 214 | 5.5 | Carbohydrate transport and metabolism |
E | 293 | 7.5 | Amino acid transport and metabolism |
F | 85 | 2.2 | Nucleotide transport and metabolism |
H | 175 | 4.5 | Coenzyme transport and metabolism |
I | 189 | 4.8 | Lipid transport and metabolism |
P | 146 | 3.7 | Inorganic ion transport and metabolism |
Q | 139 | 3.6 | Secondary metabolites biosynthesis, transport and catabolism |
R | 389 | 10.0 | General function prediction only |
S | 182 | 4.7 | Function unknown |
- | 1197 | 30.6 | Not in COGs |