Table 3. Nucleotide content and gene count levels of the genome
From: Complete genome sequence of Oscillibacter valericigenes Sjm18–20T (=NBRC 101213T)
Attribute | Value | % of totala |
|---|---|---|
Genome Size (bp) | 4,470,622 | 100.0% |
Coding region (bp) | 3,837,687 | 85.8% |
G+C content (bp) | 2,377,733 | 53.2% |
Number of replicons | 1 | |
Extrachromosomal elements | 1 | |
Total genes | 4,795 | |
RNA genes | 72 | |
rRNA operons | 3 | |
Protein-coding genes | 4,723 | 100.0% |
Pseudo genes | 0 | 0.0% |
Genes with function prediction | 2,483 | 52.6% |
Genes in paralog clusters | 1,666 | 35.3% |
Genes assigned to COGs | 3,037 | 64.3% |
Genes assigned Pfam domains | 3,007 | 63.7% |
Genes with signal peptides | 1,064 | 22.5% |
Genes with transmembrane helices | 1,002 | 21.2% |
Paralogous groups | 500 | % of totala |